“CRISPR, Human Gene Editing, And Esvelt’s Regret”

“CRISPR, Human Gene Editing, and Esvelt’s Regret”

For your primary post, please respond to one of the following three topics with a post of at least 125 words that addresses each point given in the instructions. Also, please reply to at least one fellow student on any topic.

Topic 1

: Jennifer Doudna on CRISPR. View the NBC News story about CRISPR (1)*, including an interview with its co-discoverer, Jennifer Doudna. Then, address the following issues:

  • (a) What applications of CRISPR look particularly promising for improving human well-being?
  • (b)  What sort of ethical issues have arisen or are likely to arise with the deployment of CRISPR?

Topic 2 [Reading]: Societal Aspects of Human Gene Editing. Read the article by Neuhaus (2)* and/or the article by Ossola (3)*, then address the following:

  • (a) Where do you think our procedures, regulations, and laws ought to come down regarding human genome editing, with CRISPR (or any other tool)? Take a clear position on this.
  • (b) Explain your rationale.

Topic 3 [Reading]: Esvelt’s Regret. In the article by Zimmer (4)*, Kevin Esvelt says that he made a huge mistake by championing the application of a technology that he now says is far too dangerous to actually deploy. Based on the article, address the following:

  • (a) What is the technology that he championed? What does it consist of and why does he think it’s too risky to use outside the lab?
  • (b) In your opinion, what sorts of laws and regulations, if any, should society put into place to regulate the technology that Esvelt regrets championing?

*References (in Strayer Writing Standards format).

  1. NBC News, June 11, 2017. Life changer, https://www.nbcnews.com/dateline/video/life-changer-965215299885
  2. Carolyn P. Neuhaus, March 16, 2017. Genome editing: bioethics shows the way. http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.2001934
  3. Alexandra Ossola, August 6, 2015. Should bioethicists “get out of the way” of CRISPR research?, https://www.popsci.com/should-bioethicists-get-out-way-crispr-research
  4. Carl Zimmer, November 16, 2017.  ‘Gene drives’ are too risky for field trials, scientists say, https://www.nytimes.com/2017/11/16/science/gene-drives-crispr.html?_r=0
 
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Economic Principles – Microeconomics

In this assignment, you will develop a paper in which you select an industry that interests you, describe that industry, and explain how government might impact the industry.

An Example Economic Paper and Economic Paper Template are provided below for this assignment.

Instructions

Review your chapter readings and use the resources provided to develop a 2–3-page paper on Economic Principles – Microeconomics in which you:

  1. Visit the Census Bureau (NAICS) website and select an industry that has a description. Some of the smaller industries are named, but not described.
    • The industry could be broad, such as industry 11 Agriculture, Forestry, Fishing, and Hunting, or it could be narrow, such as industry 112112 Cattle Feedlots.
      • The more digits in the industry label, the narrower the industry.
  2. In a few short paragraphs, describe your selected industry using the industry description at the NAICS website.
    • Be sure to write in your own words. Don’t just copy and paste the NAICS text.
    • Identify some of the major companies in this industry
    • Identify the goods, and/or services this industry produces. Use the information from the NAICS website. You can supplement this information with what you find in a separate Google search.
  3. Describe a microeconomic variable for your industry. Microeconomic variables include prices, sales, production, advertising, investment, etc.
  4. Include a graph, chart, or table showing this microeconomic variable over time.
    • You do not need to create this graph, chart, or table. Find one that has already been created and paste it into your paper. For example, if your industry is U.S. automobile manufacturing, Google, “U.S. automobile manufacturing over time.” Select the “images” option. Choose one of the graphs, charts, or tables. Then copy and paste it into your paper.
    • Include a reference to the source of the graph, chart, or table. Microeconomic relationships and market outcomes are covered in Weeks 2–4.
  5. Describe one way the government might impact this industry. Examples might include price controls, regulations, taxes, or any other way you can think of.
    • Government intervention through price controls, regulations, taxes, and antitrust enforcement were covered in Weeks 2 and 4.
  6. This course requires the use of Strayer Writing Standards. For assistance and information, please refer to the Strayer Writing Standards link in the left-hand menu of your course. Check with your professor for any additional instructions.

Resources to Complete the Assignment

The specific course learning outcome associated with this assignment is:

  • Explain economic principles and their applications in the real world.
 
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Microbiology Lab Exercise Help

LAB EXERCISE 2

In this exercise you have a case in which you need to identify the causative agent of disease. You need to perform several laboratories tests. The task is to select from several options which are the appropriate tests and explain why you are going to perform them.

First read the case, then answers the multiple choice questions. And then answers the following questions , which are the questions that you will be submitting in your Assignment Folder

1. What is the first thing you are going to do with your sample? 2. How would you describe colony #1? 3. How would you describe colony #2? 4. What test do you do next? Why you have chosen such test ? 5. What test do you do next? Why you have chosen such test ? 6. Explain, identify and describe the causative microorganism of the disease.

 

Identify the unknown

Case : A 45 year old female with previous rhinorrhea, pharyngitis, and cough visits her doctor with a 102o fever which appeared abruptly after a sudden shaking chill episode. She has chest pain and a productive cough with rust colored sputum. Auscultation demonstrates inspiratory rales and “tubular” breath sounds in the right lung. X-ray shows diffuse lobar consolidation of the right lung. Sample is from sputum.

 

I. Chose from the following multiple choice the best answer (looking at the pictures) and explain or justify your answers in each question.

 

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/case2_bc.jpg1.  What is the first thing you are going to do with your sample?

A. Perform a Gram staining

B.  Streak for isolation on MacConkey agar and blood agar plate

C. Catalase Test

D. Coagulase Test

E. Citrate Test

 

 

Let’s work up colony #1 first, then come back for colony 2. http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/case2_bc.jpg 2. How would you describe colony #1? A. Alpha-hemolytic and small

B. Alpha-hemolytic and large

C.  Gamma-hemolytic and large

D. Gamma-hemolytic and large

E. Beta- hemolytic and small

B. Beta-hemolytic and large

 

3. What will you do next with colony #1? A. Perform a Gram staining

B.  Streak for isolation on MacConkey agar and blood agar plate

C. Catalase Test

D. Coagulase Test

E. Citrate Test

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/sa1.jpg

 

4. Does this mean the bacteria must be staphylococci?

A. Yes

B.  No.

 

5. What test do you do next?

A. Perform a Gram staining

B.  Streak for isolation on MacConkey agar and blood agar plate

C. Catalase Test

D. Coagulase Test

E. Citrate Test

 

 

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/CATAL.jpg

6. What does this result mean? A.  Staphylococcus

B. Streptococcus

C. Bacillus

 

7. What test do you do next?

A. Perform a Gram staining

B.  Streak for isolation on MacConkey agar and blood agar plate

C. Catalase Test

D. Coagulase Test

E. Citrate Test

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/coag-ex.jpg

 

 

The results of the test for this organism are shown on the BOTTOM.  Some bacteria from a colony were mixed with rabbit plasma and incubated overnight.  The tube at the top is provided for comparison as a control.

 

8. This result means A.  Staphylococcus epidermidis

B. Staphylococcus aureus

 

II. Here again is an image of the blood agar plate from case 2.  Now let’s work up colony type #2.

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/case2_bc.jpg 1. How would you describe colony #2?

A. Alpha-hemolytic and small

B. Alpha-hemolytic and large

C.  Gamma-hemolytic and small

D. Gamma-hemolytic and large

E. Beta- hemolytic and small

B. Beta-hemolytic and large

 

 

 

2. What will you do next with colony #2?

A. Perform a Gram staining

B.  Streak for isolation on MacConkey agar and blood agar plate

C. Catalase Test

D. Coagulase Test

E. Citrate Test

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/spn3.jpg

3. What does this test show? A. Gram-positive cocci.

B. Gram- positive cocci in a chain

C.  Gram-positive cocci in pairs.

.

4. Does this mean the bacteria must be streptococci?

A. Yes B.  No.

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/CATAL.jpg What test do you do next? A. Citrate test

B. Coagulase test

(The result of the test is negative) C.  Catalase test.

 

5. What does this result mean? A. Staphylococcus

B.  Streptococcus

 

6. What test do you do next? A. Oxidase test

B.  Optochin (P disk)

C. Citrate test.

D. Motility test.

E. Methyl Red.

http://www.mgm.ufl.edu/~gulig/mmid/mmid-lab/images/spn_p.jpg

 

7. What does this result means?

A. Sthaphylococcus aureus

B. Staphyloccous epidermitis

C. Streptococcus pneumonia

Explain why you have chosen the microorganism.

 
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1500 Words-Statistical Nutrition Paper Due 7hours

DT5051 and NU5002 data anlysis(2).pdf

 

DT5051 and NU5002. Energy balance report. Results.

Sixty-five students participated in the study.

Missing data was removed which left 61 participants

Data was cleaned using boxplots to remove outliers

Left 47 participants; 2 were male, 45 were female.

To ensure a homogenous sample 2 males were removed leaving 45 females.

Descriptive statistics

gender

Frequency Percent Valid Percent Cumulative

Percent

Valid 2 45 100.0 100.0 100.0

All participants were female

Descriptive Statistics

N Minimum Maximum Mean Std. Deviation mean intake 45 752 2548 1611.63 384.281

mean BMR 45 1192 1578 1388.23 108.817

mean TEE 45 1195 3414 2132.26 484.488

weight 45 48.0 90.0 64.622 10.0387

height 45 1.50 1.85 1.6524 .06453

BMI 45 18 34 23.95 3.861

Valid N (listwise) 45

Comment on the distribution of data. Observe that there is a difference between mean intake

and mean total energy expenditure.

 

 

Paired samples ttest looking at the difference between intake and expenditure

T-Test

Paired Samples Statistics Mean N Std. Deviation Std. Error Mean Pair 1 mean intake 1611.63 45 384.281 57.285

mean TEE 2132.26 45 484.488 72.223

 

Notice the difference between the two means

Paired Samples Correlations

N Correlation Sig. Pair 1 mean intake & mean TEE 45 .113 .460

 

Paired Samples Test

 

Paired Differences

t df

Sig. (2-

tailed) Mean

Std.

Deviation

Std. Error

Mean

95% Confidence

Interval of the

Difference

Lower Upper

Pair

1

mean intake –

mean TEE

520.632

583.396 86.967 -695.903 -345.360 -5.987 44 .000

 

 

 

 

Should be presented as follows:

t (44) =-5.99;p<0.01

this indicates that there is a significant difference between mean intake and mean energy expenditure, showing that the group were not in energy balance. (intake was significantly different to expenditure)

 

This is the t-test

This is the p value Notice the difference between the two means

 

 

Pearson Correlation between mean intake and mean energy expenditure

Correlations

Correlations

mean intake mean TEE mean intake Pearson Correlation 1 .113

Sig. (2-tailed) .460 N 45 45

mean TEE Pearson Correlation .113 1

Sig. (2-tailed) .460 N 45 45

 

This is the correlation coefficient indicating that there is little association between intake and expenditure

This is the p value showing that there is no association between mean intake and mean energy expenditure

 

Linear regression graph between mean energy intake and mean total energy expenditure

 

The data is widely dispersed around the regression line (r2 = 0.01).

 

Pearson Correlation between mean weight and mean energy expenditure

Correlations weight mean TEE weight Pearson Correlation 1 .247

Sig. (2-tailed) .102 N 45 45

mean TEE Pearson Correlation .247 1

Sig. (2-tailed) .102 N 45 45

 

This is the correlation coefficient indicating that there is little association between weight and expenditure

This is the p value showing that there is no association between weight and mean energy expenditure

 

Linear regression graph between weight and mean total energy expenditure

 

The data is widely dispersed around the regression line (r2 = 0.06).

 

COURSEWORK ENERGY BALANCE STUDY MARCH (1).docx

COURSEWORK ENERGY BALANCE STUDY

Background

In order to study some of the techniques used and to highlight some of the problems encountered in the study of energy balance and its regulation in man, all students will conduct a 7-day energy balance study on themselves.

Energy Balance Equation

 

Energy intake (kJ/d) = Energy output (kJ/d) + Gain or loss of body energy stores (kJ/d)

 

Reference: Dulloo and Schutz (2011) ‘Energy balance and weight regulation’ in Geissler C and Powers H (eds) Human Nutrition 12th Edition, Churchill Livingstone.

 

The aim of the report is to identify whether a cohort of students, during the period of time studied are in energy balance.

 

REPORT WRITING

A study of energy balance

This coursework (1500 words) is designed to give you practical experience of measuring energy balance from measurements of energy intake and expenditure. By doing this coursework you gain further experience of undertaking a 7-day weighed record method to collect dietary intake data. You will also gather information on physical activity to gain a better understanding of concepts in energy balance. In addition you will extend your knowledge and ability to analyse group data regarding energy balance and further develop your skills in scientific report writing.

You will be given further guidance regarding this within the timetabled teaching.

Learning outcomes assessed:

1. Explain the concepts of balance and turnover and the theory and practise of their measurements with particular reference to energy and demonstrate an appreciation of the factors implicated in energy balance regulation in humans.

2. Select appropriate analytical techniques for the experimental study of aspects of energy balance.

3. Have developed an ability to apply nutritional theory to practical situations.

 

Structure of the report.

The limit is 1500 words +/-10%. Please note that cover page, contents page, tables, charts, graphs, references (in text and full reference list) and the appendices are not included within the word count. Try to write concisely and quote the word count at the end of your report.

The report should be written in the format of a scientific report and should be written in the third person and past tense. Word process the document using Arial font size 12 (used in the module handbook) and 1.5 line spacing.

The report will be submitted on-line. Turnitin has a maximum size limit and reports such as these often exceed this size limit. However Turnitin is a more sophisticated marking tool and is more user friendly than the Weblearn dropbox.

You should create two separate documents 1) The first being the scientific report in PDF and this should be submitted on Turitin. 2) The second your appendices which should be submitted in the weblearn dropbox. This should also be in a PDF and should contain material relevant to your report that would disrupt its flow if it were included within the main body. The raw class data, the 7-day weighed intake diaries, the physical activity diaries, all DietPlan data for the individual days of 7 day-weighed intake must be included here. Avoid using your mobile devices for scanning these documents as the quality is very poor and you are then required to collate separate scanned documents.

Both documents – the scientific report and the appendices must be submitted by the 25th April before 3 pm.

Your report should include the following sections:

Cover page & title.

The main purpose of the title should summarise your work in a single phrase or sentence and should explain the nature of your report. Try to be clear specific and brief.

(You can use the title given in this booklet).

Contents List

The contents page sets out sections and subsections of the report and their corresponding page numbers. The aim is to allow the reader to find specific information in the report easily from the table of contents.

Abstract: (~10 % of the overall word allowance)

This is a summary of your report to allow the reader to quickly understand the reasons for your work, the methods used, your findings (so you should present your key data) and your conclusions.

It should include the following sections which should be structured by using sub-headings:

Background: Two or three sentences to set the context of your work and justification for why the study was necessary. Refer to published work. The aim should be clearly stated at the end of the background.

Methods: Summarise what you did clearly and concisely. Mention the methods used to calculate BMR, the use of PAR, how you assessed changes in body stores and how you measured dietary intake. You could also mention briefly the statistics used.

Results: Write two or three sentences on your main findings and present you key results, indicating any significant difference. Your results should relate to the aim of your research.

Conclusion: Give your final conclusion in one sentence. Make sure your conclusion is

supported by your findings.

Introduction: (~ 30% of the overall word allowance)

The introduction ‘sets the scene’ for your report and provides justification for your work. It should supply background information on the subject area and end with the aims of the practical work. This section should include how and why we measure energy expenditure and our interest in energy balance considering the factors which influence both energy expenditure and the control of energy balance.

Methods: The main purpose of a methods section is to describe the techniques and equipment used to carry out the practical work, and to do so in sufficient detail so that a competent worker could repeat it.

For the purposes of this report and due to the restricted word count it is sufficient to write ‘ Refer to module booklet for further details on methodology for the 7-day weighed record, measurement of physical activity and measurement of energy stores.’

Results: (25 % of the overall word. Remember tables, graphs and figures are not included in the overall word count)

This is where you present your data. This should be done in a logical, clear and simple way using a table(s) and graph(s). The results should be presented neatly and in concise tables. Do not include tables copied from SPSS or other computer packages – select the information that you consider is important. Only polished data should be presented here. Only present class data. Your tables and graphs should be stand alone figures and you should include one or two short explanatory sentences explaining your results. Consider the title of your charts and graphs as they should clear.

You should describe your data and include all variables.

You should also include the following as a minimum:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation for the following:

· Weight and energy expenditure

· Energy intake and energy expenditure

Try to interpret the strength of Pearson’s correlation and be able to reference this.

You should produce two scatterplots indicating 1) the correlation between weight and energy expenditure 2) Energy intake and energy expenditure.

The scatter plots should include the regression line with the r2 value.

Each graph must be given a title, the axes must be labelled and the correlation coefficient stated.

Think about whether the sample population were in energy balance and how you might present the energy balance data.

Discussion: (~ 30% of the overall word allowance)

Comment on the results you have found for the class data. Do you think the results are correct? Are they accurate? Explain why and use references to support your opinion. Briefly describe the major sources of error in the study. How could the study be improved? What can you conclude from the analysis of the class data? Are your results in agreement with those from similar published experiments? There are some key references which will help you which are saved on web learn – please refer to these.

Conclusion: (5% of the overall word allowance)

This may only be a single sentence or one short paragraph but should sum up what you have concluded from the study. It should relate to the aim or objectives stated in the introduction.

References

If you use data from a published source this must be referenced in the body of your report. Referencing correctly is extremely important. You must always include a full reference in your reference list. Use the Harvard referencing system. A section on the Metranet explains this system of referencing: http://metranet.londonmet.ac.uk/services/sas/library-services/referencing/referencing2.cfm

Appendices

The appendices contain material relevant to your report that would disrupt its flow if it were included within the main body. The raw class data, the 7-day weighed intake diaries, the physical activity diaries, all DietPlan analyses for the individual days of 7 day-weighed intake must be included here. This is so that the marker can judge your ability to collect and analyse data. Each appendix should be clearly labelled and referred to where appropriate in the main text.

 

What you need to do to complete the report:

 

1. Measuring energy intake using a 7-day weighed record method.

2. Measuring energy expenditure using a seven day physical activity diary and calculated basal metabolic rate.

3. Changes in body energy stores will be assessed by measuring body weight.

4. Entering your data to a Google spreadsheet so that analysis of group data can take place.

 

For the purposes of this study, it will be assumed that body water content remains constant during the 7-day experimental period.

 

PART 1 MEASUREMENT OF ENERGY INTAKE

Method

Weigh all food that you eat and drink each day, for 7 consecutive days, using dietary scales. Use the same method and paperwork which you used in the module DI5004/HN5053 Techniques in Nutritional Science and Research/Dietary Assessment which are currently on the weblearn pages for this module.

You should start your 7 day weighed intake from 3/3/16 and complete this on the 9/3/16. You complete the seven day physical activity record so that you are measuring physical activity and dietary intake at the same time.

Food Scales

You will need an electronic food scales accurate to 1-2g for part of your course work. If you don’t have scales at home a set can be borrowed from the university for a short period. Scales can be borrowed and returned Monday or Friday 3.00 to 4.00 pm ONLY from Arun Rajan (Technician) located in the Science Centre, room number SC2-24 (Technician). However the number of scales are limited and provision is purely on first come first served basis. If scales are not available you will need to make their own arrangements.

Please note: Students must return scales immediately after completion of their dietary assessment.

In order to borrow the scales, you are required to pay a deposit (£15 cash or £30 cheque made out to “London Metropolitan University”). This will be returned to the student when the scales are returned (undamaged).

Analysis of dietary intake

As soon as you complete the record, analyse the content energy of your diet by using DietPlan. You should include your weighed intake records and dietary analysis in the appendices of your report.

You will also need to calculate the mean energy intake over the 7-day period. For this study, no information is needed about micronutrients, fibre or the proportion of saturated fat etc and marks will not be given for including it.

 

PART 2 MEASUREMENT OF ENERGY EXPENDITURE

Record of physical activity

You will use activity diary cards. On these cards, you will see that the day is divided into 24 x one-hour blocks with each block sub-divided into 5-minute divisions. You will record your activities for seven consecutive days (the same days on which you are recording your dietary intakes) using one card for each 24-hour period. Start the diary from the time you get up in the morning, eg if you get up at 07:30, start filling in the activities from that point in the diary and not from 00:00 at the top of the page. Each activity should be recorded to the nearest 5 minutes .

 

Activity codes

On the front page of the diary is a list of code letters and numbers which are to be used to code each activity. The letters refer to the most common activities, for example:

L = lying and sleeping

ST = standing

S = sitting active (eg during a lecture)

W = walking

Before you start, make up some code numbers to signify all other activities that you think you may carry out during the 3 day study period, for example:

1 = sitting passive (eg watching T.V.)

2 = cycling

3 = eating

4 = washing

 

Make sure you know what activity each code number refers to – record this information in the diary There may be unexpected activities that will occur during the day which you will not have coded for, for example, running for a bus. Don’t forget to make a note of these. Try to be as accurate as you can with your recording and try not to change your activities from your normal routine as this will not then be a true representation of your 24-hour energy expenditure. If you undertake activities which take less than 5 minutes, for example going up one flight of stairs, round up the figures if it takes more than 2 minutes; you can make an adjustment next time you undertake the activity on the same day.

 

Obviously the diary must be filled with activities at the end of the 24 hours. Once the diary is completed, add up the total number of minutes attributed to each activity and record this information . Make sure the total number of minutes adds up to 1440.

 

For each activity recorded, a physical activity ratio (PAR) or Metabolic Equivalent (MET) is required. These values may be obtained from the references below which is available on weblearn:

Human Energy Requirements: Report of a Joint FAO/WHO/UNU Expert Consultation

 

· Ainsworth BE et al (1992). Compendium of physical activities: classification of energy costs of human physical activities. Med Sci Sports Exerc 25:71-80.

· Bender DA, Bender AE (1997). Nutrition: A reference handbook. Oxford: Oxford University Press. Page 83-87.

· Department of Health (1991). Dietary reference values for food energy and nutrients for the United Kingdom. London: HMSO. Page 205.

 

Before total energy expenditure can be calculated from the activity diaries, it is necessary to calculate basal metabolic rate (BMR). You should calculate BMR in KJ/day using the equation as you have been previously shown.

 

For the calculations, you will need to convert this to kJ per minute (1 MJ = 1000 kJ and 1 day = 1440 minutes).

Calculation of energy expenditure (activity diaries and BMR)

The following example shows how the energy expenditure cost of an activity can be calculated by combining (a) the physical activity ratio (PAR) for each of the activities recorded in the activity diary with (b) the BMR calculated from the Henry (2005) equation:

Activity = walking for 25 minutes (out of 1440 minutes).

PAR for walking = 2.8

cost of walking = 70 (25 x 2.8)

BMR = 5 kJ per minute.

Total energy expended in walking = 70 x 5 = 350 kJ.

 

The total cost of all the activities performed over the 24 h period will equal the 24 h energy expenditure.

 

Calculation of total energy expenditure

Use the data obtained from the activity diaries

Calculation of energy expenditure (activity diaries and BMR)

The following example shows how the energy expenditure cost of an activity can be calculated by combining (a) the physical activity ratio (PAR) for each of the activities recorded in the activity diary with (b) the BMR calculated from the Henry (2005) equation:

Activity = walking for 25 minutes (out of 1440 minutes).

PAR for walking = 2.8

cost of walking = 70 (25 x 2.8)

BMR = 5 kJ per minute.

Total energy expended in walking = 70 x 5 = 350 kJ.

 

The total cost of all the activities performed over the 24 h period will equal the 24 h energy expenditure.

 

Calculation of total energy expenditure

Use the data obtained from the activity diaries, PAR values and BMR to calculate your total energy expenditure for each of the 7 days.

 

PART 3 MEASUREMENT OF CHANGES IN BODY ENERGY STORES

Background

Energy in the body is stored predominantly as fat (adipose tissue) with smaller quantities of carbohydrate (glycogen). Protein stores (predominantly muscle but also the essential organs) will only be used as a source of energy in the absence of an adequate energy intake or certain disease states. It is difficult to measure body fat and glycogen stores accurately. Changes in body weight are a very crude measure of body composition changes, particularly over such a short period of time (7 days). Body weight fluctuates on a daily basis and this usually reflects changes in hydration status. Small weight changes do not necessarily indicate changes in body energy stores. However, for the purpose of this practical the body weight will be used because of the difficulty of undertaking other more accurate methods. There will be an opportunity to study body composition techniques in year three.

 

Method

Record your weight (kg) on the day that you start the study and on the day that you start weighing your food and recording your activity finish the study and again on the day that you finish the study. Weigh yourself at the same time on each day wearing the same light clothes and empty your bladder immediately before the weight is recorded.

The energy value of body fat is 39.4 MJ/kg or 39400 kj/kg. (Elia.M., Stratton R., Stubbs J. (2003) ‘Techniques for the study of energy balance in man’ Proceedings of the Nutrition Society, 62, 529-537.)

For the purposes of this activity you can assume a change in body weight will either be as a result of an increase or decrease in body fat.

 

Make sure you use the same set of scales on both days.

 

Final calculation of energy balance

Calculate energy balance for each of the seven days and a mean value for the 7-day period.

 

Coursework assessment information

 

80-100

 

A*

Demonstrates an excellent ability to produce a scientific report according to module booklet guidelines. Demonstrated through excellent report structure, style of writing and sentence construct. Results tables/graphs should be clearly presented, with appropriate titles and brief explanations. Student has correctly used graphs/charts to present results.

Demonstrates excellent knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating an excellent ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to accurately explain the reasons for the results obtained .

Students should produce a clear and accurate introduction and discussion explaining the results.

 

To further explain results and interpretation students should make reference to a range of relevant literature (Should evidence further reading in addition to key papers and text books) set out as per standard university style

70-79

 

A

Demonstrates a very good ability to produce a scientific report according to module booklet guidelines. Demonstrated through very good report structure, style of writing and sentence construct. Results tables/graphs should be clearly presented, with appropriate titles and brief explanations. Student has correctly used graphs/charts to present results.

Demonstrates very good knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating an very good ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to accurately explain the reasons for the results obtained .

Students should produce a clear and accurate introduction and discussion explaining the results.

 

To further explain results and interpretation students should make reference to a range of relevant literature (Should evidence further reading in addition to key papers and text books) set out as per standard university style

 

60-69

 

B

Demonstrates a good ability to produce a scientific report according to module booklet guidelines. Demonstrated through good report structure, style of writing and sentence construct. (minor errors noted) Results tables/graphs should be clearly presented, with appropriate titles and brief explanations. Student has correctly used graphs/charts to present results.

Demonstrates good knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating an good ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to accurately explain the reasons for the results obtained .

Students should produce a clear and accurate introduction and discussion explaining the results.

To further explain results and interpretation students should make reference to a range of relevant literature which includes mainly key papers and text books set out as per standard university style

 

50-59

 

C

Demonstrates a reasonable ability to produce a scientific report according to module booklet guidelines. Demonstrated through good report structure, style of writing and sentence construct. ( errors noted) Results tables/graphs should be clearly presented, with appropriate titles and brief explanations. Student has correctly used graphs/charts to present results.

Demonstrates reasonable knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating a reasonable ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to provide reasons for the results obtained .

Students should produce a clear and accurate introduction and discussion explaining the results.

To further explain results and interpretation students should show understanding of key papers and text books set out as per standard university style

43-49

 

D

Produced a scientific report according to module booklet guidelines. Demonstrated through a reasonable report structure, style of writing and sentence construct. (a number of errors noted but the report remains comprehensible). The presentation of results tables/graphs could be improved although should have appropriate titles; may lack explanation.

Demonstrates reasonable knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating a reasonable ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

Students should correctly present descriptive statistics but errors may be noted with other statistics.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to provide reasons for the results obtained .

Students should produce a clear and accurate introduction and discussion explaining the results.

To further explain results and interpretation students should show understanding of and make reference to key papers and text books set out as per standard university style.

 

40-42

 

E

Demonstrates an ability to produce a scientific report according to module booklet guidelines. Demonstrated through a reasonable report structure, style of writing and sentence construct. (a number of errors noted but the report remains comprehensible). The presentation of results tables/graphs could be improved although should have appropriate titles; may lack explanation.

Demonstrates reasonable knowledge and critical understanding of concepts of energy expenditure, energy balance including taking energy expenditure and energy balance measurements.

Show knowledge of the correct methods of enquiry by demonstrating a reasonable ability to undertake statistical analysis and interpret and evaluate data related to energy balance. This should be demonstrated by presenting accurate calculations and interpretations of:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

· Students should interpret the strength of correlation and be able to reference this.

 

Students should correctly present descriptive statistics (10% error noted) but errors may be noted with other statistics.

 

To be able to apply concepts and principles of the gathered energy balance data to published studies and to provide reasons for the results obtained .

The production of a basic introduction and discussion with some explanation of the results.

To further explain results and interpretation students should show understanding of and make reference to key papers and text books set out as per standard university style. Students may just make reference to the literature without using it to explain results. Reference should be made to a range of relevant literature (should understanding of and make reference to some key papers and text books) set out as per standard university style

 

35-39%

 

FAIL

Demonstrates limited ability to produce a scientific report according to module booklet guidelines. Demonstrated through a confused structure, style of writing and sentence construct. (a number of errors noted but the report is difficult to understand in parts). Presentation of results needs improvement.

Some inaccuracies in statistical analysis and interpretation of data (up to at least 65% inaccurate data presented to achieve 35%). This would show in any of the calculations below:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

Limited ability to evaluate the use of measurements of energy expenditure to assess energy balance through the production of a poor introduction and discussion with limited or no explanation of the results. Students may just make reference to the literature without using it to explain results. Reference should be made to a range of relevant literature – may only make reference to lecture notes. Some inaccuracies may be noted within citations.

26-35 %

 

FAIL

 

Demonstrates limited ability to produce a scientific report according to module booklet guidelines. Demonstrated through a confused structure, style of writing and sentence construct. (a number of errors noted but the report is difficult to understand). Poorly presented results,-inaccurately labelled, results lack structure.

Some inaccuracies in statistical analysis and interpretation of data (up to at least 50% inaccurate data presented to achieve 26%) . This would show in any of the calculations below:

· Descriptive data and include all variables.

· t-test comparing energy intake and energy expenditure

· Pearson’s correlation

· Weight and energy expenditure

· Energy intake and energy expenditure

Limited ability to evaluate the use of measurements of energy expenditure to assess energy balance through the production of a poor introduction and discussion with limited or no explanation of the results. Students may just make reference to the literature without using it to explain results. May only make reference to lecture notes (should understanding of and make reference to some key papers and text books) set out as per standard university style. Inaccuracies may be noted within citations.

 

≤ 25 %

 

FAIL

Demonstrates poor skills in report writing. This is demonstrated through failure to meet any of the learning outcomes.

Examples of this are the presentation of a report structure which doesn’t meet the requirements of the module, poor sentence construct, inadequate or inaccurate presentation of data. Results not explained/poorly presented. Sections missing, limited/ no interpretation of results. Little reference to the literature. Poor understanding shown. Report difficult to understand

Revision of energy balance for scientific report (1) (2).pptm

Revision of energy balance for scientific report

 

Principles of Human Energetics

Energy: the capacity of a system to perform work

 

Can appear in many forms, including light, chemical, mechanical and electrical

 

All of the energy forms can be entirely converted to heat

Why is energy needed

To maintain body functions – to breathe, to keep the heart beating, to keep the body warm and all the other functions that keep the body alive

 

For active movement – muscle contraction

 

For growth and repair which require new tissues to be made.

 

Energy from food

Energy Balance

Energy balance equation I = E + R

where:

I = energy intake

E = energy expenditure

R = energy retention

Balance cont.

Can have +ve and -ve balance

 

+ve – intake>losses (eg growth, obesity)

-ve – intake < losses (eg starvation)

Energy Balance Equation

 

 

Energy intake = Energy expenditure + Δ (energy stores)

 

(Reference: Dulloo and Schutz (2017) ‘Energy balance and body weight regulation’ in Geissler C and Powers H (eds) Human Nutrition 13th Edition, Churchill Livingstone.)

 

 

Useful reference

Hills,  Mokhtar Byrne (2014) Assessment of Physical Activity and Energy Expenditure: An Overview of Objective Measures. Front Nutr. 1: 5

10.3389/fnut.2014.00005

 

 

Other useful further reading

Weblearn:

 

NU5002/Assessment area/Practical report

Please refer to the publications posted for background reading for your report

 

DT5051/Assessment Area/Scientific Report

Please refer to the publications posted for background reading for your report

DI5003.HN5002 Coursework guidance.pptx

Course work guidance (Refer to the module booklet for more detailed guidance)

 

Background to your work…

In order to study some of the techniques used and to highlight some of the problems encountered in the study of energy balance and its regulation in man, all students will conduct a 3-day energy balance study on themselves.

 

Energy Balance Equation

Energy intake (kcal/d) = Energy output (kcal/d) + Gain or loss of body energy stores (kcal/d)

(Refer to the module booklet for further information)

 

Why are you doing this ?

This coursework (1500 words) is designed to give you practical experience of measuring energy balance from measurements of energy intake and expenditure.

By doing this coursework you gain further experience of undertaking a 3-day weighed record method to collect dietary intake data.

You will also gather information on physical activity to gain better understanding of concepts in energy balance.

In addition you will extend your knowledge and ability to analyse group data regarding energy balance and further develop your skills in scientific report writing.

 

What do you need to demonstrate

Explain the concepts of balance and turnover and how energy is conserved and utilized in metabolic pathways in health & disease.

Interpret information from a variety of sources, including primary sources such as laboratory data and published research papers.

Understand how experimental evidence has been used to support theories of metabolism

 

Word count

Keep this report as concise as possible.

 

The limit is 1500 words but no more than 2000 words.

References and tables are not included in the word count.

Please quote the word count (excluding references and tables) at the end of your report.

 

Cover page & title.

Should be short and precise. It should explain the nature of your report.

You can use the title given in the booklet.

 

Contents page

Take time to present this neatly and precisely.

 

Format the contents page appropriately and use leader dots from the section title to the page number.

 

Abstract

This is a miniversion of the report. It should be written last and is generally limited to about one paragraph in length (100-150 words).

Use the same subheadings in your abstract that you have used in your report.

 

It should:

include a line or two of introduction and state the main objective(s) of the practical work

mention the methods used to calculate BMR, the use of PAR, how you assessed changes in body stores and how you measured dietary intake.

summarise your main findings. In other word state you key results and if needed use a small but nicely presented table.

state the main conclusions

 

The abstract should be written in the past tense and should never give any information not stated in the report. View published abstracts to help you with this.

 

Introduction

The introduction ‘sets the scene’ for your report.

This section should include

how and why we measure energy intake and expenditure

our interest in energy balance

considering the factors which control energy intake and influence energy expenditure.

It should supply background information on the subject area and end with the aims of the report.

Don’t forget to cite your reference material.

 

Methods

The main purpose of a methods section is to describe the techniques and equipment used to carry out the practical work, and to do so in sufficient detail so that a competent worker could repeat it.

For the purposes of this report and due to the restricted word count it is sufficient to write

‘ refer to module booklet for further details on methodology for the 3-day weighed record, measurement of physical activity and measurement of energy stores. ‘

 

Results

This is where you present your data.

This should be done in a logical, clear and simple way using table(s) and graph(s).

Do not include tables copied from SPSS or other computer packages – select the information that you consider is important.

Only present class data – do not make reference to your individual data.

It is acceptable to use the linear regression graphs produced by SPSS only.

 

Results

Your tables and graphs should be stand alone figures and you should include one or two short explanatory sentences explaining your results.

Consider the title of your charts and graphs as they should clear.

Do not present raw data. This can go in the appendices.

Look to publications for guidance – how is data presented here

 

Results

Refer to the module booklet and supportive information for details on the analysis you should present.

 

Discussion

Comment on the results you have found for the class data.

Are they accurate?

Explain why and use references to support your opinion.

Briefly describe the major sources of error in the study. How could the study be improved?

 

Discussion

What can you conclude from the analysis of the class data?

 

Are your results in agreement with those from similar published experiments?

 

There are some key references which will help you which are saved on weblearn – please refer to these.

 

Discussion

Don’t overstate your results.

Don’t introduce anything new within the discussion which you haven’t already introduced within your report.

Cite your sources of information.

Read around the topic area – for your understanding of the subject and to help your skills in scientific writing develop

 

Conclusion

This may only be a single sentence or one short paragraph but should sum up what you have concluded from the study.

It should relate to the aim or objectives stated in the introduction.

 

References

You must cite and reference information that you use from published sources.

Referencing correctly is extremely important and an essential part of scientific writing.

You must always include a full reference in your reference list.

Use the Harvard referencing system.

A section on the Metranet explains this system of referencing.

http :// www.londonmet.ac.uk/services/sas/library-services/referencing/referenci ng.cfm

 

Appendices

The appendices contain material relevant to your report that would disrupt its flow if it were included within the main body.

The raw class data, the 7-day weighed intake diaries, the physical activity diaries, all McCance and Widdowson analyses for the individual days of 7 day-weighed intake must be included here.

This is so that the marker can judge your ability to collect and analyse data.

Each appendix should be clearly labelled and referred to where appropriate in the main text.

 

What do I need to think about ?

Build on your learning from previous modules.

Look at your previous feedback.

Make sure your work makes sense.

If you need help with scientific writing, citing references and presenting data use the study hub for help.

Follow the guidance in the module booklet.

James Davies, our academic mentor has time available to support you. Please refer to his announcements on weblearn.

Don’t leave things to the last minute.

 
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Lab Assignment

Make sure to do all steps.

 

Unit 4

Work through the following genetics problems and submit their answers as part of the introduction to your lab report.  Please show your work!  You will not receive full credit for problems that only have an answer! The problems belong in your introduction portion of the lab report.

1. Both a man and a woman are heterozygous for bent little fingers. Bent little fingers are dominant over straight little fingers. What is the chance that their child will have bent little fingers?

2. Both a brother and a sister do not have freckles, but their parents have freckles. Freckles (F) are dominant over no freckles (f). What are the genotypes of the parents?

3. A father is far-sighted, the mother has normal vision, and all five of their children are far-sighted. Being far-sighted (F) is dominant over having normal vision (f). Give the probable genotypes of all persons concerned.

4. A woman is heterozygous for polydactyly (which is a dominant condition in which a person has more than the normal number of fingers and/or toes). The woman has a child with a man who is homozygous normal. What is the chance that their child will have more than ten fingers and/or toes?

5. Sarah can’t curl her tongue – which is a recessive trait. Both of her parents can curl their tongues – which is dominant. Give the genotypes of all persons involved (use T and/or t in the genotypes).

6. A man has type AB blood and his child has type B blood. What are all of the possible blood types of the child’s mother? (Hint: think about the genotypes of blood types.  You will need to work more than one Punnett Square.)

7. A child who does not have dimples or freckles is born to a man who has dimples and freckles (both dominant) and a woman who does not. What are the genotypes of all persons concerned?

Try typing in “Baby Steps Through Punnett Squares” in your search engine or try this site:

http://www.sbs.utexas.edu/sanders/bio309/Lectures/2006/Punnet.htm (Links to an external site.)

Tips:

  • Be sure to show your work!  If you give me answers only, I will not give you full credit.  Use graphs/Punnett squares, explain your logic, etc.
  • Try out several blood types on #6.  Using the actual genotypes is very helpful.
  • Be aware that on #7 we have 2 traits, so a complete genotype will have 4, not 2 letters for each person. It is called a Dihybrid Cross.

LAB ASSIGNMENT

For this weeks lab, you will be using a tool called the virtual genetics lab. Here you will create crosses of experimental animals and try to predict what mode of inheritance your organisms have. This lab requires that you complete 3 crosses in the software, the first one is practice with the answer and two additional experimental crosses in which there is no answer, you must make crosses until you are sure that you have enough evidence to reject or support your hypothesis.

VirtualGeneticLabNewton2019.pdfPreview the document

Website needed to download the virtual genetics lab: http://vgl.umb.edu/ (Links to an external site.)

Upload your lab report, including the information from all 3 crosses as your experiment.

 
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Lab Report

Then, read my explanation of sexual selection:

Sexual selection is a type of natural selection that occurs due to variation in mating success. For example, have you ever wondered why birds-of-paradise (or many other birds) are brightly colored? And why is it typically only the male birds that are so colorful? The male birds court the female birds through color, unique morphological features, songs, and dances. Males that display elaborate versions of these qualities are more desirable to a female, because this informs the female that he is healthy, strong, and intelligent. Essentially, he is persuading the female that his genes are the most desirable. Thus, the males with the most extravagant features are chosen as mates and these traits for bright coloration or elaborate morphological features (or behavior) are  passed  on to offspring. Consequently, these traits become more frequent within the population. Over time, as these traits are selected for over and over again, the features become more and more exaggerated, even as they begin to interfere with survival (think conspicuous colors that prevent camouflage or large tail feathers that interfere with flight). Visit https://evolution.berkeley.edu/evolibrary/article/evo_28 (Links to an external site.) for more information on sexual selection (and many other biological topics).

The concept of sexual selection gives us some background on our experiment.  In our experiment last week, we assessed mate choice in guppies. More specifically, we tested whether females would prefer males with large, showy fins over males with small fins, and whether males would choose larger females over smaller females.

I have attached the data , use it to do this :

In excel, calculate the mean, standard deviation, sample size, and standard error, as well as confidence intervals, for male and female mate choices. Graph the two means and add custom error bars to those means using the confidence interval values, and include a figure caption. Additionally, please answer the following questions in a textbox within your excel sheet:

1. What did you hypothesize before the start of the experiment?

2. Does the data provide evidence to support your hypothesis or hypotheses? Explain (In other words, interpret your graph).

3. Could the experimental design be improved? How so? (Hint: Think about sample size and replicates,  subjectivity in individually assessing 1. distance to mate choices and 2. preferred verses non-preferred traits, or interference that may affect behavior like movement and light changes, etc.) Is our data reliable?

4. How does this experiment relate to the concept of sexual selection? (Hint: Mate choice based on coloration and morphological features)

Please upload your assignment as an excel file titled Yournamefish.xxls.

 
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Power Point

In the mid-1950s, the first study linking cigarette smoking to lung cancer was published. In the decades that followed, many other studies supported this finding and a host of other health-related effects attributed to smoking were uncovered.

Over the last few decades, cities and states have created local regulations prohibiting smoking in certain public places. In 2009, the U.S. Food and Drug Administration was given regulatory authority of all tobacco products.

Chapter 20 of your textbook begins with a comparison of two sources of inhalable nicotine: traditional tobacco cigarettes and E-cigarettes. Because E-cigarettes are a relatively new technology, less is known about the long-term effects of the firsthand and secondhand inhalation of vaping products. However, in recent years they have been treated and regulated similarly to traditional cigarettes.

Your assignment for this unit is to create a 10- to 12-slide PowerPoint presentation that covers the following elements:

  • the anatomy and physiology of respiration (e.g., explain how breathing works);
  • the effects of the inhalation of smoke and E-cigarette vapor on gas exchange in the lungs;
  • specific diseases associated with smoking, both pulmonary and cardiovascular; and
  • lastly, based on what you know about E-cigarettes from the reading and your own research, defend or oppose the regulation of vaping products as traditional cigarettes.

You will need to cite and reference at least one article from the CSU Library databases as one of your sources of information.

CSU Library Database Instructions

  • Open the CSU Online Library link in your student portal.
  • Under “discovery search,” click the tab for “articles.””
  • In the keyword search field, type keyword “vaping” and/or “E-cigarette” to find articles that cover this topic. You may get different results doing separate searches for each keyword. The keywords “electronic cigarette” may also be used.
  • From the list of available articles that comes up, select one that interests you.
  • Click on the article link, then click on “PDF full text or HTML full text,” and read the article. (Note: Not all articles will provide the full text; if your choice does not, you will have to select a different article.)
  • Discuss what you learned from your chosen articles in 1-2 slides in your presentation. Cite the article according to APA guidelines, and list it on your references slide.

PowerPoint slides should not contain a lot of text; use speaker notes to provide the details of your presentation. The general practice is to use no more than 5-6 bullet points per slide. The quality and depth of your speaker’s notes will be significantly factored into your grade.

Title and reference slides should be included. These do not count toward the 10- to 12-slide requirement. In addition to providing references on a reference slide, you need to cite your material in the slides as appropriate; use APA format for your references and citations.

Suggestions for Searching for Illustrations

Use at least 3 images in the presentation. When looking for illustrations to use, it is suggested that you type the subject into a search engine and click “images.” For your presentation, you are allowed to copy and paste images (being sure to cite and reference them). However, you are NOT allowed to copy and paste content, such as text, tables, and the like. As much as possible, your presentation needs to be in your own words.

PowerPoint Guidance

Do you need to refresh your knowledge concerning PowerPoint? Review this tutorial on PowerPoint Basics.

  • Click on the Notes tab on the right side of the tutorial screen to see a transcript of the PowerPoint webinar.
  • You can also search online for information concerning best practices about what should and should not be done when creating a PowerPoint presentation.

Notes:

  • As directed in the tutorial above, pay attention to the background and font colors in your presentation—try to avoid using plain black text on a white background, but also avoid using colors that are visually difficult to see (such as yellow text on a light background) or that are unpleasant (such as red text on a yellow background). Strive for a pleasing, visually appealing appearance.
  • Reminder: The speaker notes should provide the detail and discussion of your presentation, and everything in the presentation should be in your own words, not copied and pasted from a source.
 
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Lab Assignment #5

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 1

Lab 5: Solvents and cells

Part 1: Chemistry of Molecules Read/watch the provided resources and take notes, applying the information to what we learned this week. CO2 and Soda: https://www.youtube.com/watch?v=HFCeV5BVBh0 Dissolving M&Ms: https://www.youtube.com/watch?v=umJmRaG6v80 When you are finished, answer the following questions: 1. You are having a debate with a friend about the science behind the Diet Coke and Mentos phenomenon. Your friend thinks that since the volume of matter after the experiment (the big mess) seems to be more than what was originally present in the individual components (soda/Mentos) before they were combined, that the “explosion” is the result of carbon dioxide being produced (made) by the reaction. Is this true? Does the amount of carbon dioxide increase through this reaction? Use what you’ve learned this week to verify or debunk your friend’s argument.

2. During the M&Ms experiment, why did the scientist emphasize that each of the treatments in this experiment needed to be stirred the same say, for the same length of time?

3. For the M&M experiment, name and describe the chemical property that is demonstrated by both the sugar and the candy coloring in the shell of an M&M that permits dissolution in the water, but not in the oil.

4. In your own words discuss this quote. Was Jamf mistaken in his understanding of the relative strengths of ionic and covalent bonds? Explain why/why not (in your own words!).

 

5. The scientific field of organic chemistry is based entirely on studying the chemical structure and reactivity (bonds and chemical reactions) of carbon containing molecules. Based on what you learned in class this week, discuss why carbon is so important that entire fields of study are dedicated to understanding and applying it.

 

 

 

 

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 2

Part 2: A Picture is Worth a Thousand Words This unit we learned about cells, their structure, and how they carry out the processes of life. We know that there are size restrictions that prevent living cells from being too small or too large. However, the rules that govern cell size may be more complex than scientists originally thought. The existence of ultra-small living cells has been debated for two decades. This debate was settled in February of 2015, when researchers from the U.S. Department of Energy’s National Laboratory at UC Berkeley obtained the first microscopy images of ultra-small bacteria- about as small as life can get. Follow this youtube link to view the research images/reconstructed videos of the cell structure: https://www.youtube.com/watch?v=ofNrtg-FpSc; primary article may be provided upon request. This part of the lab will focus on a popular media ScienceDaily article that summarizes the researchers’ findings. However, before we investigate these ultra-small nanobes, it is important that we fully comprehend the history and scientific impact behind this debate. For this, you’ll need to read the following extract: “In 1996, researchers published a description of a meteorite that fell from Mars, which sparked a long and complicated debate over the existence of what they called ‘nanobacteria’, later also described as nanobes. Various teams argued over whether life, theoretically, could live to be that size, but the debate didn’t really get anywhere because no one really had any evidence for either side. One side said all the things needed for life – DNA, RNA, proteins and solvents – couldn’t actually fit inside a cell that small, while others said life could be that small, but just in a starved, inactive state. Researchers argued over the theoretical limit for how small a cell could get in diameter and volume, and one team even reported finding some marine nanobes, but lacked direct microscopic evidence to prove they fit inside the size range to classify them as such. But now, such bacteria found in some Colorado groundwater have been imaged, and these things are undeniably tiny – several times tinier than several estimates for the lower size limit of life on Earth, in fact. And as difficult as it is to see them, the researchers think they could actually be quite common.” http://www.sciencealert.com/new-images-reveal-the-tiniest-known-life-forms-on-earth Next, click the link to read the article describing researchers’ findings and use this information, along with what you learned this week to answer the provided questions. https://www.sciencedaily.com/releases/2015/02/150227181339.htm When you are finished, answer the following questions: 6. The image at the beginning of the ScienceDaily article shows and describes the visible structure of the cell, and the authors state: “The cell has a very dense interior compartment and a complex cell wall.” As you remember from your readings, not all cell types contain a cell wall. What kinds of cells, other than bacteria, would you expect to possess a cell wall? List the

 

 

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 3

functions that this structure provides for these organisms. How do organisms that don’t have a cell wall execute these same functions? 7. The image at the beginning of the ScienceDaily article shows and describes the visible structure of the cell, and the authors state: “The darker spots at each end of the cell are most likely ribosomes.” Of all the different structures that could exist within a cell, why do you think that the authors think that these are ribosomes? (Hint: think about the types of cellular structures that are/aren’t found within bacteria, and what ribosomes do, and the importance of that job, within a cell.)

8. Interestingly, the ScienceDaily article states: “images also revealed dividing cells, indicating the bacteria were healthy and not starved to an abnormally small size.” This statement implies that in order for cells to divide they must be “healthy”. Discuss the requirements that a “healthy” eukaryotic cell must meet before it will under cell division. What are the consequences if a eukaryotic cell divides even if these requirements are not met? 9. The ScienceDaily authors state: “About 150 of these bacteria could fit inside an Escherichia coli cell and more than 150,000 cells could fit onto the tip of a human hair”. To provide you with some context so that you can really understand this statement: the spherical diameter of a

typical Escherichia coli cell is 1.3 m (micrometers), and the spherical diameter of these new

ultra-small bacteria is ~0.23 m. Compare the SVR of these new ultra-small bacteria to that of a typical E. coli cell (Hint: you need to calculate the SVR for each), which organism has a larger SVR, does this make sense in the context of the size of the cell? 10. Throughout the ScienceDaily article, the researchers studying these tiny bacteria acknowledge the challenges that such small cells face when it comes to performing the basic functions of life, and the additional challenges that limit our ability to study such small organisms. This makes sense, considering that previously calculated theoretical minimum diameter of a cell was established (and generally accepted by respected scientists and experts

in the field) to be 0.250-0.30 m. The authors say, “There isn’t a consensus over how small a free-living organism can be, and what the space optimization strategies may be for a cell at the lower size limit for life.” Why, before this, did scientists think that living cells couldn’t be much smaller than this lower limit (why is it that when a cell is too small, that it “can’t” survive)?

11. Choose another statement/quote from this article (or the other summary or the original research paper) and discuss how it relates to the material that we learned this week. Be sure to use specific examples (and your own words).

 
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Photosynthesis

To submit this assignment, students will complete the Lab Worksheet on pages 7-10, then upload their completed document as a DOC or PDF file in Canvas

 

BIO 101 Lab 08: Photosynthesis

 

Notification: If you have a disability that makes it difficult to complete this lab, please contact your instructor. Please provide your instructor a copy of the Memorandum of Accommodation (MOA) from NVCC Disability Support Services.

 

Objectives:________________________________________________________________

· Determine the effects of light on the rate of photosynthesis

· Determine the absorption spectrum of leaf pigments

 

Background:_______________________________________________________________

Sunlight provides the majority of energy for organisms living in most ecosystems, however only a subset of organisms are capable of harvesting this energy. Plants use their chloroplasts to absorb the energy from sunlight. This energy is then stored in the covalent bonds of glucose, a simple sugar, and can be used by the plant for structural purposes (cellulose), as usable energy (ATP generation), or for energy storage (starch). Animals can eat plants to obtain glucose and produce energy through a process called cellular respiration.

 

The overall reaction for photosynthesis is represented by the chemical equation:

 

6 CO2 + 6 H2O + sunlight → C6H12O6 + 6 O2

 

The entire process is complex and involves many enzymatic reactions. You may notice that the photosynthesis reaction is nearly the exact reverse of cellular respiration. From the equation above the three key elements for photosynthesis to occur are carbon dioxide (CO2), water (H2O), and light. If any of the three are missing from the system then photosynthesis will not occur, and glucose production in the plant will be negatively affected.

 

 

 

 

 

 

 

 

 

 

 

There are two phases of photosynthesis: H:\BIO101 Lab Manual edits\BIO101 XZ VB AS revision 2017\Edited AJS\512px-Simple_photosynthesis_overview.svg.png

 

1) In the light-dependent phase chlorophyll molecules located in the thylakoid membrane stacks of the chloroplasts absorb the energy from light resulting in the production of ATP and NADPH.

 

2) In the light-independent reactions (the Calvin Cycle) the energy stored in ATP and NADPH is used to ultimately convert carbon dioxide to sugar. The process of taking carbon dioxide from the air to build carbohydrates is called carbon fixation.

 

 

In solution, CO2 can be converted to carbonic acid (H2CO3) when dissolved in water. The carbonic acid will then release hydrogen ions (H+), causing the pH of the solution to decrease.

 

CO2 + H2O H2CO3 HCO3- + H+

 

Bromothymol blue is a pH indicator that changes color based on the pH of a solution. Bromothymol blue turns yellow at lower pH and blue as the pH is increased. This indicator can be used to track respiration (turns yellow as CO2 is added to the system) or photosynthesis (turns blue as CO2 is consumed).

 

Different colors of Bromothymol blue at the indicated pH conditions

 

Light energy is a small part of the electromagnetic spectrum which is visible to the eye. The wavelength of visible light lies between 380 nm and 760 nm. In order to obtain the energy from light, plants must absorb light energy using pigments, namely chlorophyll a, chlorophyll b, carotene and xanthophyll. These pigments show characteristic colors because they do not absorb all light equally. By measuring the absorbance at different wavelengths, the absorption spectrum of the leaf pigments can be obtained.

Materials:__________________________________________________________________

· Internet

 

 

 

Safety:

Follow all standard laboratory safety procedures.

 

Procedure:________________________________________________________________

 

Experiment 1. Observing photosynthesis (work in groups)

1. In the laboratory, you would add about 60 ml of tap water into a beaker and then add about 1 mL of bromothymol blue to the water in the beaker.

 

2. Using a clean straw, you would then gently blow into the solution until the color of the solution turns yellow.

 

3. You would next fill three test tubes 2/3 full with this yellow-colored solution.

 

4. Then, you would place a 3-inch cutting of Elodea into Tube 1 and another 3-inch cutting of Elodea into Tube 2, making sure that the cuttings were completely immersed in the solution. After this, you would wrap Tube 1 with green film. Tube 3 will be left alone and will not contain a plant cutting.

 

5. Watch the following video about setting up the photosynthesis lab from time 0:00 until 5:46.

https://www.youtube.com/watch?v=GWUawtweJGM

 

Ignore the use of a second plant in the video, we only use Elodea in this laboratory activity. In the video, Tubes 1 and 2 contain Elodea plant cuttings and Tube 1 is wrapped in foil instead of green film.

In our photosynthesis lab experiment, we wrap Tube 1 in green film, which only allows green-colored light to reach the Elodea plant cutting. The green film we use ends up having the same effect as the aluminum foil used in the video.

 

6. In Table 1 in the Lab Worksheet, record the color of the solution before blowing into it in the “before exhaling” column.

 

7. In Table 1 in the Lab Worksheet, record the color of the solution after blowing into is in the “after exhaling column.

 

8. Answer question 1 in the Lab Worksheet

 

9. In the laboratory, you would then place the test tubes in front of a light source such as a fluorescent lamp. You would allow the tubes to be exposed to the light for 1 hour.

 

10. Record the color of the solution in each test tube in Table 2 of the Lab Worksheet

 

11. Make a hypothesis about how the color of bromothymol blue solution in each test tube will change and record the color you expect for each tube in Table 2 in the “Expected Color after 1 hour of light exposure” column.

 

When making a hypothesis, consider why the pH-indicating solution turned color in the first place and what might happen if the substance that caused the color change was removed by a plant performing photosynthesis.

 

12. Watch the following video showing the results of photosynthesis lab from time 0:00 until 2:41.

https://www.youtube.com/watch?v=SZsQG_rPJwQ

In the video, Vial A corresponds to Tube 1 in our photosynthesis lab experiment. Ignore Vial B from the video. Vial C in the video corresponds to Tube 2 in our photosynthesis lab experiment and Vial D in the video corresponds to Tube 3 (the control).

Note that in our photosynthesis lab experiment, we wrap Tube 2 in green film, which only allows green-colored light to reach the Elodea plant cutting. The green film we use ends up having the same effect as the aluminum foil used in the video.

 

13. Using the results diagrammed below, fill in Table 2 in the Lab Worksheet

 

 

14. Record the color you observe for each test tube in Table 2 in the “Observed color” column.

 

15. Answer questions 2 – 3 in the Lab Worksheet.

 

 

Experiment 2. Absorption spectrum of leaf extract (work in groups)

1. In the laboratory, you would first turn on the spectrophotometer and allow it to warm up for 15 min.

 

2. You would then insert the blank cuvette (which contains alcohol) in sample holder marked “B” and the cuvette containing leaf extract in sample holder “1”, making sure that the orientation of the cuvettes is correct.

 

3. Then, you would select a wavelength to measure and calibrate the spectrophotometer by measuring the absorbance of the blank cuvette at this wavelength. You would then see the absorbance reading set to 0.

 

4. Now, you would measure the absorbance of the cuvette containing the leaf extract and record the absorbance in Table 3 in the position corresponding to the wavelength you selected.

 

5. You would repeat steps 3 – 4, changing to a different wavelength each time, until all the wavelengths in Table 3 had been measured. Record absorbance readings in Table 3.

 

6. Watch the following video about using a spectrophotometer from time 0:00 until 4:43.

https://www.youtube.com/watch?v=C-M7EtSuD40

Note that the video uses a tube containing a red liquid, while in our photosynthesis lab, we would use a tube containing leaf extract (which would appear green) as our sample tube and a tube containing alcohol (which would be transparent) as our blank tube.

 

7. Table 3 has been partially filled in for you in the Lab Worksheet. Complete Table 3 by filling in the color of light that corresponds to the grouped wavelengths.

 

8. Answer question 4 by making a Line Graph of the data in Table 3.

 

9. Answer questions 5 and 6 based on your Line Graph

 

10. Answer question 7 based on the results of both Experiment 1 and Experiment 2.

 

BIO 101 Lab 08: Photosynthesis Worksheet

 

Name: __________________________ Section: ______________________

 

Data Analysis and Synthesis Questions:

 

Table 1. pH-indicating dye color

Color before exhaling into beaker Color after exhaling into beaker
   

 

1. Why did the solution in the beaker change color after you exhaled?

 

 

 

 

 

Table 2. Observing Photosynthesis

Tube Color before 1 hour of light exposure Expected Color after 1 hour of light exposure Observed color after 1 hour of light exposure
1

(Elodea + green film)

     
2

(Elodea)

     
3

(no plant)

     

 

2. In this experiment , what is the purpose of the tube without the plant?

 

 

 

 

 

 

3. Explain the color change or lack of color change in the three experimental tubes:

 

a. Tube 1:

 

 

 

 

b. Tube 2:

 

 

 

 

c. Tube 3:.

 

 

 

 

Table 3. Absorbance of Different Wavelengths of Light

Color of Light Wavelength (nm) Absorbance   Color of Light Wavelength (nm) Absorbance
  400 0.58     575 0.09
  425 0.82     600 0.12
  450 0.61     625 0.16
  475 0.44     650 0.23
  500 0.22     675 0.53
  525 0.08     700 0.04
  550 0.06     725 0.05

 

 

 

 

4. Make a Line Graph of the absorbance readings versus the wavelength of light data from Table 3. Be sure to include x-axis and y-axis labels and a chart title.

 

 

 

 

 

 

 

 

 

5. Which wavelength(s) and colors of light are most effectively absorbed by leaf pigments (where are the peaks in your Line Graph)?

 

 

 

 

 

 

6. Which wavelength(s) and colors of light are poorly absorbed (where are the valleys in your Line Graph)?

 

 

 

 

 

 

7. Draw a general conclusion about which color(s) of light are best for plant growth based on your data from both the measurement of absorbance of light in leaf extracts and the observations of CO2 use by Elodea cuttings in different light conditions.

 

 

 

 

 

 

 

 

 

 

BIO 101 Lab 08: Photosynthesis 10
 
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Bio Homework Lab

Genetics Review

 

This assignment will make up for the two genetic labs that we would of done if we were meeting face to face. I will have you do various things to help you grasp the material. We would of done A LOT of Punnett squares in lab. If you are having trouble please contact me.

 

1. Match the correct definition to the term in the table below. Type the letter in the table.

 

A. Alternative form of a gene, located at a specific point on chromosome. (DNA coding that will determine distinct traits)

B. Having two identical alleles for a given gene

C. A unit of hereditary information with a specific sequence in DNA.

D. Having two different alleles for a given gene.

E. Breeding an organism of an unknown genotype with an organism with a homozygous recessive genotype. The offspring phenotype will determine the unknown genotype.

F. The genetic makeup or set of alleles of an organism

G. Allele’s phenotypic effect is not observed in a heterozygote

H. Allele’s phenotypic effect is fully expressed in a heterozygote

I. A cross done to determine if a gene is located on an autosome or sex-chromosome.

J. The physical traits of an organism determined by genetic makeup.

 

Term Definition Letter
Gene  
Allele  
Genotype  
Phenotype  
Homozygous  
Heterozygous  
Recessive Allele  
Dominant Allele  
Test Cross  
Reciprocal cross  

 

 

 

 

Star Wars Genetics – Monohybrid Crosses

 

Watch the following video to review on Monohybrid crosses.

https://www.youtube.com/watch?v=i-0rSv6oxSY

 

Geneticists at Endor have been investigating the genetic makeup of the organisms in this community. You will work through a few problems to help them out.

 

2. Brown body color (B) is dominant to red (b). Chewbacca recently met Susiebacca at a dance. They don’t have to worry about social distancing there right now. Chewbacca is heterozygous for his brown hair, but Susiebacca has red hair. Fill in the Punnett square below to see the possibilities if the night went well and they were to have children.

 

On the table below type in your answers. The black square will be left open. The parental gametes will be in the gray squares. There should only be one letter in each of these squares. The white squares are the possible kids. There will be two letters in those squares. Use this info for each time you see this type of table. Be sure to answer all of the questions. Some have two parts.

 

     
     
     

 

 

a. What are the possible genotypes for their children? What is the ratio?

 

b. What are the possible phenotypes for their children? What is the ratio?

 

 

3. Everyone in Anakin Skywalker’s family has “The Force” (A) which is determined by the amount of metacholorian in the body. Having “The Force” is a dominant trait. His family brags that they are a “purebred” line. He recently married a nice girl, Amidala, who does not possess “The Force” (a). Create a punnett square to show the possibilities that would result if Anakin and his new bride had children.

 

     
     
     

 

 

a. What are the chances of a child with “The Force”?

 

b. What are the chances of a child without “The Force”?

 

c. Would Anakin’s children still be considered purebreds? Explain.

 

 

4. Wicket W. Warrick, general of the Ewoks and his wife recently had a Lil’ Ewok. However… this has not been a happy occasion for them. Mrs. Warrick has been upset since she first saw her new baby who has stripes. She claims the hospital goofed and mixed up her baby with someone else’s baby. Mr. Warrick is homozygous for his solid-colored fur, while his wife is heterozygous for her solid-colored fur. Solid (A) is dominant to stripes (a) in fur. Do the Punnett square to see if the hospital messed up.

 

     
     
     

 

 

a. List the possible genotypes of their kids. What is the ratio?

 

b. List the possible phenotypes of their kids. What is the ratio?

 

c. Did the hospital mess this one up or is it possible that it is their kid? Explain.

 

 

Dihybrid Problem (only one I promise)

 

Watch this video to remind yourself about dihybrid crosses.

 

https://www.youtube.com/watch?v=qIGXTJLrLf8

 

 

5. In horses, the coat color black is dominant (B) over chestnut (b). The trotting gait is dominant (A) over the pacing gait (a). If a homozygous black pacer is mated to a homozygous chestnut, heterozygous trotter.

 

In this table you will not have anything in the black square. The parental genotypes will be in the gray squares. You will have two letters in each gray square. The potential babies are going to be in the white squares. There will be four letters in those squares.

 

         
         
         
         
         

 

 

 

a. What are the parental genotypes?

a.

b.

 

b. What are the gamete combinations you got from the FOIL method for both parents?

a.

b.

 

c. What are the genotypes of the offspring and the ratio?

 

d. What are the phenotypes of the offspring and the ratio?

 

 

Sex-Linked Problems

 

Watch the following video to review yourself on sex-linked traits.

https://www.youtube.com/watch?v=h2xufrHWG3E

 

Be careful when answering these questions. They will be asking things specific to gender. Remember that Sex-linked problems tell us both the gender and the genotype/phenotype.

 

6. In humans, hemophilia is a sex-linked recessive trait on the X chromosome. If a female who is a carrier for hemophilia marries a male with normal blood clotting, answer the following questions.

 

     
     
     

 

 

a. What fraction of the female children will have hemophilia?

 

b. What fraction of the female children will be carriers?

 

c. What fraction of the male children will have normal blood clotting?

 

d. What fraction of the male children will have hemophilia?

 

 

7. Color-blindness is a sex-linked recessive trait on the X chromosome. Two normal vision parents have a color-blind son.

 

     
     
     

 

 

a. What are the genotypes of the parents?

 

b. What fraction of the male children will be color-blind?

 

c. What fraction of the female children be carriers?

 

d. What fraction of the female children will be color-blind?

 

 

Blood Typing Problems

 

Watch the video to review yourself on blood typing.

https://www.youtube.com/watch?v=9O5JQqlngFY

 

8. Suppose a father and mother claim they have been given the wrong baby at the hospital. They must have been at the same hospital the Ewoks were at. Both parents are blood type A. The baby they have been given is blood type O.

 

     
     
     

 

 

Is it possible it is their kid? Work out the Punnett square and explain your reasoning.

 
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