Bio Homework Lab

One paragraph per discussion topic

Discussion 1: GMOs

Some have suggested that GMOs will be necessary to feed the growing population. Are you pro or against GMO? Look for some examples of GMO food that are currently available to the public. If you can find supporting articles for the pro or con on GMOs feel free to post them to support your opinion. One problem many have with GMOs is that we don’t know if they are fully safe for human consumption. What reassurances do you need to feel safe eating GMO food? Do you think there are long term effects that we don’t know yet about GMOs? We will discuss how they are made when we hit the Biotech lecture.  Have fun with this topic and search the web for examples.

Discussion 2: Designer babies

We now live in exciting times when it comes to what scientists know and are able to do in molecular biology. We will go over genetic engineering and GMOs in the biotech lecture. If you follow the news you have probably seen some stories about scientists are now able to edit the genomes of embryos. The goal is to eliminate genetic diseases and potentially make designer babies.  A group in China has already done this. Watch the video on the link below. It is one of my favorite videos and I have all my classes watch it. You will then get sucked in and start watching other videos this group produces, as you have already watched two of them for another post.

 

Here is the link: https://youtu.be/jAhjPd4uNFY

Now for the fun part. Do you think that we should edit the human genome to eliminate genetic diseases? What did you think of some of the topics presented? Genetic engineering and ethics is a hot topic right now. You can be either pro or con, but I want to hear your opinion. The video gives various things that could happen from gene editing. You can also do a simple Internet search to find articles about crispr and how it the new “hot” method in molecular biology. Feel free to find articles that support your opinion and post the links. This can be an uncomfortable topic, but it is one that will be gaining more attention in the near future.

 

Discussion 3: Super Bugs

Here is the link:

https://youtu.be/fyRyZ1zKtyA.

 

You can also visit the CDC site below for links to more information.

https://www.cdc.gov/drugresistance/index.html

From the above information you should be concerned about the emergence of these superbugs. It seems that we are so dependent on antibiotics for so many things that we are promoting their evolution. These days some kids seem to be kept in a bubble because the parents fear what their surroundings may do them. I don’t have kids (just my yorkie furchild), but when I would baby sit my nephews they just wanted to put anything and everything in their mouths. This is essential so we can build up our immune system. I seriously saw specific wipes to clean off pacifiers. My parents would just wipe off the dirt and give it back when I was a kid. Just a small rant. I am all for keeping yourself healthy, but still have fun in life.

We know the superbugs are here and they will continue to evolve. What can we do to slow this down and possibly end it? Do we need to reduce our dependence on antibiotics? You see antimicrobial/antibacterial everything all over the place. I am sure most of you have hand sanitizer in your bag. Do you think our germophobe movement had something to do with this? Give some ideas/personal observations that might have led to the evolution of superbugs. Feel free to find articles that discuss superbug cases and post the links. You can be pro or con. Everyone is welcome to their own views on this topic. I will throw out there as an optional side topic is the whole debate on vaccines. That links back to the superbugs too. Have fun with this topic.

Discussion 4:

Sticking with genetic engineering once again. The first video introduces the topic how scientists are using modern technology with stem cell biology to generate organs. The second video is a little more far fetched and talks about making human/pig chimeras. You might have no idea what that is, so go watch and learn about some of the cutting edge research out there.

https://www.youtube.com/watch?v=oRHxX9OW9ow&feature=youtu.be

https://www.youtube.com/watch?v=mCM3UpkRms8&feature=youtu.be

 

Now that you are a little more informed about the topic how do you feel about it? The demand for organs is not going away and I presented some options. Do you think that the general public would be for this? I will admit that I am addicted to all the medical dramas on TV and there was one episode where a patient was refusing a valve that was from either a pig or cow to fix their heart. Have fun with this one.

 
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Assignment 2

[INSERT TITLE HERE] 1

Running head: [INSERT TITLE HERE]

[INSERT TITLE HERE]

Student Name

Allied American University

Author Note

This paper was prepared for [INSERT COURSE NAME], [INSERT COURSE ASSIGNMENT] taught by [INSERT INSTRUCTOR’S NAME].

PART I: Short Response Questions

Directions: Using proper APA format, please write a response to each of the following questions that is two to three paragraphs in length. Please visit the Academic Resource Center (ARC) for concise APA guidelines.

1. Explain what is meant by tissue typing? Why has this become so important in recent years?

2. Define organ and organ system.

3. What are some of the differences between the lymphatic and cardiovascular systems?

4. Explain the difference between the nervous and endocrine systems. Include what types of functions are regulated and the “message carriers” for each system.

5. What is the difference between an epidemic and a pandemic? What factor makes pandemics increasingly common in modern times?

6. Briefly describe a bacterium. List the ways in which bacteria produce disease.

7. Explain the difference in function between an antibiotic and a vaccine.

PART II: Case Study

Directions: Please answer each of the case study questions below. Ensure that your responses are detailed and that each response is at least one half of a page to one page in length. Please use proper APA format. If necessary, please cite any sources. You may also utilize LIRN for your research. Please visit the Academic Resource Center (ARC) for concise APA and LIRN guidelines.

1. Would it be an advantage or disadvantage if tendons and ligaments had a large amount of elastic (stretchy) fibers? Explain.

2. Roger lost one of his kidneys due to an accident as a child. His doctor has advised him to avoid contact sports. Why did the doctor recommend this? What are the advantages of having two kidneys?

3. Deborah was studying world events in school. As she studied the events surrounding the anthrax scare in the United States during the early years of the 21st century, several questions came to mind. Why isn’t anthrax easily destroyed? If it is a bacterium, why isn’t it easily treated with antibiotics? Is there a vaccine? If so, why don’t we vaccinate everyone?

4. What would happen in the human body if there were no lymphatic system?

 
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Wildlife

Assignment 5

1. Loggerheads, like the ridley turtles, are diurnal nesters:

A. True

B. False

2. Loggerheads nest over the greatest geographic range of any sea turtle.

A. True

B. False

3. The scientific name for the Kemp’s ridley turtle is: ____________________________

4. Andres Herrera’s contribution to sea turtle knowledge and conservation was:

A. The protection of arribada sites in Costa Rica

B. The determination of the genetic origin of loggerhead populations

C. N one of the answers is correct.

D. The discovery of the “lost years” of the Kemp’s ridley

E. The discovery and recording of a Kemp’s ridley arribada.

5. In 1947, 40,000 Kemp’s ridley females were photographed on a nesting beach in Costa Rica. Sadly, by 1980, fewer than 300 females came ashore to nest

A. True

B. False

6. Japan is too far north (too cold) to permit loggerheads to nest on Japanese beaches

A. True

B. False

7. By 1990, biologists estimated that the number of female Kemp’s ridleys in the entire Gulf of Mexico numbered _________________, making it one of the most endangered species in the world.

A. Less than 100

B. There are no estimates of Kemp’s ridley numbers from this time period.

C. About2000

D. About500

8. During their “lost years”, loggerheads are at sea in ocean currents for 2-5 years.

A. True

B. False

9. Headstarting” turtles is controversial because of the ethical considerations regarding the skin grafts used for marking these young turtles

A. True

B. False

10. It takes about 25-35 years for a loggerhead to become a reproducing adult.

A. True

B. False

11. Unlike most other sea turtles, adult male Kemp’s ridleys do not migrate, and adult females rarely leave the vicinity of the Gulf of Mexico.

A. True

B. False

12. The scientific name for the loggerhead turtle is: __________________________

13. One of the reasons that Kemp’s ridleys are vulnerable to overexploitation is that the bulk of nesting occurs along 29 miles of beach in Florida.

A. True

B. False

14. Mitochondrial DNA testing has provided a window into the lineage of the various populations of loggerheads around the world

A. True

B. False

15. Research indicates that one effect of shade from tall buildings in Florida on nesting beaches is cooler beaches, resulting in a higher proportion of ______________ nestlings compared to beaches without tall buildings

16. Since TEDs are now being used in many places throughout the world, fishing practices are no longer a significant mortality source for loggerhead adults.

A. True

B. False

17. The primary purpose of the “ridley dance” is:

https://www.youtube.com/watch?v=QUt-XqWs1iE

A. to scare away predators
B. to signal that this territory is taken
C. All of these answers are correct.
D. to compact the sand over the eggs
E. to display availability to male ridleys

18. Loggerheads are referred to as “keystone species” because they:

  dig up the bottom in foraging areas and thus alter the composition of the ocean bottom communities
  A. all of these answers are correct

B. transfer huge loads of ocean nutrients to the land around nesting beaches

C. provide habitat for symbionts as “living reefs”

D. distribute shells of prey (calcium) throughout their foraging areas

 

19. Kemp’s ridleys never leave the Gulf of Mexico.

A. True

B. False

20. The primary predator of loggerhead nests in the U.S. are ___________________________.

 
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Biology

Exam Name___________________________________

MULTIPLE CHOICE. Choose the one alternative that best completes the statement or answers the question.

1) What is a gene? A) a type of eukaryotic cell B) an organelle that houses DNA C) a type of prokaryotic cell D) a type of animal cell E) a unit of heredity

2) Which of the following is a scientific conclusion based on knowing that humans and bacteria share a common genetic language?

A) Humans and bacteria have the same number of genes. B) Humans and bacteria share a common ancestor. C) The cells of both humans and bacteria store their DNA in a

nucleus. D) The same genetic code was created for humans as for bacteria. E) Bacteria will eventually develop into humans.

3) What is the difference between discovery science and hypothesis-driven science?

A) There is no difference between them. B) Discovery science involves predictions about outcomes, whereas

hypothesis-driven science involves tentative answers to specific questions.

C) Discovery science is based on deductive reasoning, whereas hypothesis-driven science is based on inductive reasoning.

D) Discovery science leads from the specific to the general, whereas hypothesis-driven science leads from the general to the specific.

E) Discovery science “discovers” new knowledge, whereas hypothesis-driven science does not.

4) What are eukaryotic genes composed of? A) A B) RNA C) C D) G E) DNA

5) Which of the following is a producer? A) dog B) sun C) cat D) earthworm E) house plant

6) Which of these is a hypothesis? A) My car is too old to function properly. B) If my car does not start and I recharge the battery, then my car will

start. C) What is wrong with my car? D) My car’s battery is dead. E) My car will not start.

 

 

7) What is the difference between a tissue and an organ system? A) A tissue cannot exist unless it is a component of an organ system,

whereas an organ system can exist independently of tissues. B) Tissues are not considered to be living, whereas organ systems are

considered to be living. C) The tissue level of organization is more inclusive than the organ

system level. D) Tissues are not composed of cells; organ systems are composed of

cells. E) An organ system includes tissues.

8) Adjacent water molecules are connected by the ______. A) sharing of electrons between the hydrogen of one water molecule

and the oxygen of another water molecule B) sharing of electrons between hydrogens of adjacent water

molecules C) electrical attraction between the hydrogens of adjacent water

molecules D) sharing of electrons between adjacent oxygen molecules E) electrical attraction between the hydrogen of one water molecule

and the oxygen of another water molecule

9) An atom with an electrical charge is a(n) ______. A) ion B) compound C) molecule D) radioisotope E) isotope

10) Sugar dissolves when stirred into water. The sugar is the ______, the water is the ______, and the sweetened water is the ______.

A) solution . . . solute . . . solvent B) solvent . . . solute . . . solution C) solution . . . solvent . . . solute D) solute . . . solvent . . . solution E) solvent . . . solution . . . solute

Please read the following scenario to answer the following question(s).

The last few miles of the marathon are the most difficult for Heather, her hair plastered to her head, sweat clinging to her arms, and her legs already feeling as if they had nothing left, just dead weight. After grabbing a cup of ice water, she feels the ice cubes smash against her nose as she gulps some cool refreshment and keeps on running. In these last few miles, the breeze kicks up and she finally feels some coolness against her skin. Drips of sweat, once clinging to her forehead, now spill down, and Heather feels more pain as the sweat flows into her eyes.

11) Sweat remained on Heather’s forehead and arms because of the ______. A) high evaporative cooling effect of water B) cohesive nature of water C) ability of water to act as a solvent D) high salt content of sweat E) ability of water to moderate heat

 

 

12) The hydrogens and oxygen of a water molecule are held together by _____ bonds.

A) osmotic B) ionic C) hydrogen D) covalent E) hydrolytic

13) In the following reaction, what type of bond is holding the two atoms together? K + Cl → K+ + Cl— → KCl

A) hydrophilic B) ionic C) hypertonic D) covalent E) hydrophobic

14) Which of the following elements, essential to life, is a trace element? A) sulfur B) iodine C) calcium D) hydrogen E) phosphorus

15) The consumption of sugar is a major cause of ______. A) gout B) cancer C) rheumatoid arthritis D) acne E) tooth decay

16) A friend of yours appears to have put on a lot of muscle very quickly, and at the same time you notice that your friend has become very irritable and depressed. It is reasonable for you to suspect that your friend has begun to take ______.

A) ephedra B) amino acid supplements C) protein powder D) creatine E) an anabolic steroid

17) A protein’s function is dependent on its ______. A) size B) temperature C) shape D) pH E) weight

 

 

18) The linear sequence of monomers in a polypeptide chain is referred to as its ______ structure.

A) tertiary B) pentamerous C) secondary D) primary E) quaternary

19) Amino acids consist of ______. A) a central hydrogen, a nitrogen atom, an amino group, and a

carboxyl group B) a central nitrogen, a carbon atom, an amino group, and a carbonyl

group C) a central hydrogen, a nitrogen atom, a hydroxyl group, and a

carbonyl group D) a central carbon, a hydrogen atom, a hydroxyl group, and a

carbonyl group E) a central carbon, a hydrogen atom, an amino group, and a carboxyl

group

20) Saturated fats are saturated with ______. A) hydrogen B) oxygen C) carbon D) phosphorus E) nitrogen

21) Proteins are polymers constructed from ______ monomers. A) 5-carbon ring B) nucleotide C) hydrocarbon D) amino acid E) peptide

22) Tay-Sachs disease results from ______ lacking a specific type of lipid- digesting enzyme.

A) the Golgi apparatus B) mitochondria C) lysosomes D) the endoplasmic reticulum E) the plasma membrane

23) When mixed with water, phospholipids spontaneously form membranes because they ______.

A) have hydrophilic phosphate groups that are attracted to water and hydrophobic fatty acid tails that avoid water

B) are capable of violating the second law of thermodynamics C) do not spontaneously form membranes when mixed with water D) have hydrophilic phosphate groups that are attracted to their

hydrophobic fatty acid tails E) have hydrophilic fatty acid tails that are attracted to water and

hydrophobic phosphate groups that avoid water

 

 

24) When using a light microscope to view a cell you obtained from scraping under your fingernails, you notice that the cell lacks a nucleus; therefore, you conclude that the cell must be a type of ______ cell.

A) fungal B) plant C) prokaryotic D) animal E) eukaryotic

25) Based on its function in detoxifying drugs, you would expect to find a large amount of smooth ER in ______ cells.

A) lung B) brain C) muscle D) liver E) intestinal

26) In plant cells, ______ contain organic nutrients, pigments, and poisons. A) ribosomes B) mitochondria C) chloroplasts D) lysosomes E) central vacuoles

27) In eukaryotic cells, what name is given to the region between the nucleus and the plasma membrane?

A) nucleoplasm B) cytosol C) gene D) phospholipid bilayer E) cytoplasm

Read the following scenario to answer the following question(s).

The earliest cells detectable in fossils were different from the cells in animals, plants, fungi, and protists living today. These first prokaryotic cells gave rise to eukaryotic cells approximately 1.7 billion years ago. The structure of eukaryotic cells today suggests how they might have evolved from their prokaryotic ancestors. Scientists examining mitochondria and chloroplasts now think that these organelles were probably free-living prokaryotes before becoming a part of eukaryotic cells long ago.

28) What evidence suggests that mitochondria might have evolved before chloroplasts?

A) Some mitochondria have chloroplasts inside of them. B) Almost all eukaryotes have mitochondria but only some cells have

chloroplasts. C) A double membrane surrounds mitochondria and a single

membrane surrounds chloroplasts. D) Only mitochondria have their own DNA. E) Mitochondria can sometimes divide to produce chloroplasts.

 

 

29) A cell that neither gains nor loses water when it is immersed in a solution is ______.

A) isotonic to its environment B) metabolically inactive C) hypertonic to its environment D) hypotonic to its environment E) dead

30) Ozygen crosses a plasma membrane by ______. A) phagocytosis B) pinocytosis C) active transport D) osmosis E) passive transport

31) Facilitated diffusion across a biological membrane requires ______ and moves a substance ______ its concentration gradient.

A) energy and transport proteins . . . down B) transport proteins . . . against C) transport proteins . . . down D) energy and transport proteins . . . against E) energy . . . down

32) Which component of the following reaction is the substrate? lactose + lactase + water → lactase + glucose + fructose

A) lactose B) fructose C) glucose D) lactase E) There is no substrate in this reaction.

33) The energy of motion is ______ energy. A) potential B) created C) stored D) conserved E) kinetic

34) In a hypotonic solution, an animal cell will _____. A) experience turgor B) shrivel C) neither gain nor lose water D) lyse E) lose water

35) An enzyme’s function is dependent on its ______. A) size B) shape C) weight D) pH E) temperature

 

 

36) The final electron acceptor of aerobic respiration is ______. A) ATP B) lactic acid C) oxygen D) carbon dioxide E) NAD+

37) Aerobic means with ______. A) oxygen B) carbon dioxide C) ATP D) carbohydrate E) light

38) Where in the cell does glycolysis occur? A) cytosol B) within the fluid just inside the inner mitochondrial membrane C) along the outside of the outer mitochondrial membrane D) ER E) between the inner and outer mitochondrial membrane

39) In metabolic terms, dogs are best described as ______. A) obligate aerobes B) facultative anaerobes C) obligate anaerobes D) facultative aerobes E) producers

40) The functioning of an electron transport chain is analogous to ______. A) a canoe going over a waterfall B) playing Ping-Pong C) a person leaping from the top to the bottom of a flight of stairs in

one jump D) a Slinky toy going down a flight of stairs E) a person climbing a flight of stairs one step at a time

41) Some friends are trying to make wine in their basement. They’ve added yeast to a sweet grape juice mixture and have allowed the yeast to grow. After several days they find that sugar levels in the grape juice have dropped, but there’s no alcohol in the mixture. The most likely explanation is that ______.

A) the mixture needs less sugar; high sugar concentrations stimulate cellular respiration, and alcohol is not a by-product of cellular respiration

B) the mixture needs more sugar; yeast need a lot of energy before they can begin to produce alcohol

C) the mixture needs less oxygen; yeast only produce alcohol in the absence of oxygen

D) the mixture needs more oxygen; yeast need oxygen to break down sugar and get enough energy to produce alcohol

E) none of the above

 

 

42) Large amounts of oxygen gas first appeared in Earth’s atmosphere about ______ years ago.

A) 4.5 billion B) 500 million C) 1.5 billion D) 2.5 billion E) 3.5 billion

Please refer to the accompanying figure to answer the following question(s).

43) One of the compounds that is a direct output of the Calvin cycle is ______.

A) C6H12O6 B) G3P C) O2 D) ATP E) NADPH

44) C4 plants conserve water by ______. A) keeping their stomata closed most of the time B) shuttling CO2 from the Calvin cycle to the water-splitting

photosystem C) growing very deep roots D) incorporating CO2 into RuBP E) running the Calvin cycle at night

 

 

45) Which of these colors contributes the least energy to photosynthesis? A) blue B) orange C) violet D) red E) green

46) What is responsible for the yellow-orange coloration of leaves in the fall? A) RuBP B) chlorophyll b C) carotenoids D) chlorophyll a E) phycoerythrin

47) How many molecules of glucose are produced by each cycle of the light reaction?

A) four B) three C) two D) zero E) one

48) Oxygen is highly corrosive; therefore, which of the following would provide definitive evidence of large amounts of O2 in the atmosphere?

A) the presence, in the fossil record, of cells with chloroplasts B) the presence, in the fossil record, of cells with mitochondria C) mass extinction D) rust E) the presence of cyanobacteria in the fossil record

49) In photosynthesis, an H+ ion gradient forms across the ______. A) thylakoid membrane B) inner chloroplast membrane C) endomembrane D) stromal membrane E) outer chloroplast membrane

50) Which of the following is an example of a polysaccharide? A) sucrose B) starch C) maltose D) fructose E) glucose

 
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Unit 6

ignment Details

Focus on Case Studies in Neurology

For this assignment you will respond to three case studies.

What is a Case Study?

“A case study is a narrative used to help you practice real-life analysis and communication skills. It is a learning tool that provides readers with “enough detail…to understand the nature and scope of the problem, and…serve as a springboard for discussion and learning” (O’Rourke, 2007, p. 391).

Use your textbook and academic resources from the Library to support your responses.

Access the Library directly from Course Resources for this class, or through the student portal. Be sure to cite and reference all your sources. The Library has a feature that allows you to automatically create an APA formatted reference.

Your completed case studies should be between 750–1000 words, and all sources must be properly cited using APA format.

CASE STUDY #1

  1. Amy is cooking dinner for her family. She moves to pull a pot off the stove and accidently touches the burner. She reflexively pulls her finger away from the stove and immediately feels the pain.
    1. Which receptor neuron is responsible for sending information from her finger to her peripheral nervous system?
    2. Is this receptor neuron, an afferent or efferent neuron?
    3. Explain where the information from the receptor neuron is sent and how does it result in Amy moving her finger away from the stove.
    4. Describe the three classes of neurons involved in this response.
    5. Evolutionarily, why do you think the human body has this system in place?
    6. What might happen if we did not have this response?

CASE STUDY #2

  1. Glen, who is 45 years old, begins to notice that his hands shake (tremors) when he is performing everyday tasks such as signing his signature. His family members have noticed that he also has muffled speech and tends to shuffle when he walks. He is diagnosed with Early Onset Parkinson’s disease.
    1. What is Early Onset Parkinson’s disease?
    2. What specific cell type is affected in Parkinson’s disease?
    3. What is dopamine? What effects does dopamine have on the body?
    4. Explain the structure of a synapse and why Glen’s neurologist would prescribe him a dopamine agonist?
    5. Glen has genetic testing performed and it is determined that he does carry an autosomal dominant mutation in the SNCA gene associated with Early Onset Parkinson’s disease. Glen has three children. Would you advise his children to have genetic testing performed to determine if they also carry the disease mutation? Why or why not?

CASE STUDY #3

3. Patricia, who is 37 years old, discusses with her physician recent symptoms that she has experienced including blurred vision, numbness in her fingers and face, dizziness, fatigue and weakness. The physician performs multiple neurological tests and she is diagnosed with multiple sclerosis (MS).

  1. What is MS?
  2. Is MS a disease of the central or peripheral nervous system?
  3. What is the main cell structure affected in MS?
  4. How is the action potential of a neuron affected in MS?
  5. The origins of MS are not clear. What do scientists hypothesize to be the causes of MS?

Your assignment should be written in an essay format. The assignment requires you to include details from research including the course materials and sources you locate on your own. Remember to use APA format to cite your sources of information, both within parenthetical citations and also within a reference page at the end of the project.

Basic Writing Requirements:

  • Between 750–1000 words not counting the title or reference pages.
  • Include a title page, double space, font size 10 or 12.
  • Include a well-developed introduction and conclusion
  • Provide exceptional content.
  • Demonstrate superior organization: use logic.
  • Free of grammar and spelling errors.
  • No evidence of plagiarism.
  • Use APA style for all citations and references.
 
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Assignment 2

The Multiple Loci VNTR (variable nucleotide tandem repeat) analysis (MLVA) technique is used to identify strains of organisms.

Because the database is quite large for S. aureus and publicly available, we’re going to focus this second assignment on an analysis of this method. Go to the website http://mlva.u-psud.fr/mlvav4/genotyping/index.php, which contains a link to a number of databases. On the left menu, click on the Staphylococcus_aureus database under the Collaborative databases option. First click the “View” button. You’ll then see appear a large list of different isolates of this strain.   Click on the “Panels” button on the right to reveal different MLVA data.

1. Under the MLVA section to the right, there are a series of mostly tags: “Sa0122, Sa0266”, ….   Below that are mostly integers. Explain what these tags mean and what the numbers stand for, based on your readings in other sections this week.

2. Describe the difference between MLVA and MLST.

3. Why are some of the MLVA numbers blank?

Now go back to the left menu and select “Staphyloccus_aureus” and choose the “Query” button instead.

4. There is a button that says “select a panel”, or you can select using checkboxes the ones you want to use. Describe the difference between the two.

Select the MLVA14Orsay option and click “Submit”.  (make sure it is the MLVA option on the left, not the MLSA on the right).

Now you see a MLVA box listing the different loci that you are going to query. Each site is a different MLVA marker. Below is an option where you can enter your MLVA set with a space between each number.   Notice that there are 14 numbers, matching the MLVA14Orsay option. Type in the sample sequence exactly as listed to see what the sample output would look like. “10 6 3 4 3 7 7 5 4 4 5 2 3 3”

You get a direct hit (of course), and it shows you the those fingerprints most closely related to the one you chose. To which strains was this hit most similar?

5. Does this mean the strains themselves came from these locations?

Notice how the red boxes indicate differences from the sequences that you entered.

6. Click on “Tree” using the “Tools” pullout menu, and select the Newick tree.  Download the tree as a text file.  Upload it here (http://etetoolkit.org/treeview/) and download the graph that you get from it, placing it into this assignment.

Now we’re going to switch over to doing analysis of Yersinia pestis using MLVA typing. Go back to the main page and select “Yersinia pestis2004”. Again, click “View” so you have an idea of what you are looking at.

7. The nomenclature is slightly different, as are the markers. Why?

8. Why doesn’t it make sense to use 50 markers for MLVA analysis, to increase specificity? Here’s a paper that discusses the addition of more VNTRs the current Anthrax MLVA analysis for ideas. http://www.ncbi.nlm.nih.gov/pubmed/19469279

9. Open the Y. pestis MLVA7 database and choose one of them.  (For example, I chose (10 9 9 8 7.5 9 6).)  Make a tree using the instructions on the website.  Purposely make a mismatch and see what happens when you generate a second tree.  What changes?  Describe the major difference between the two “trees”.

10. Go back to the main menu. Select “Geographic View”. Notice how it takes you to a world map that shows you where the isolates were found.

11. Access the matrix of distances. What does this do?

12. Find at least one other MLVA site that does sequence analysis and post it in the conference area. In one or more sentences, briefly say what the site is, what it focuses on, and what nation it is from.

13. Complete your assignment by summarizing what you’ve learned in one paragraph.  It should be a rather detailed paragraph that reflects on the various issues that this assignment has shown you.

Here are a few more sites that talk about some issues with this database.

http://mlva.u-psud.fr/MLVAnet/spip.php?article90

APA format, in-text citation, references include, 3 pages to answer all 13 questions.

 
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Evidence For The Theory Of Evolution

1. Evidence for the theory of evolution includes all but __________ (Points : 5)
the fossil record.
biochemical similarities among all living things.
catastrophism.
biogeography.

2. Chelonia mydas is the scientific name for the green turtle. Chelonia is the __________ (Points : 5)
genus.
species.
order.
domain.

3. Characteristics of prokaryotes include all of the following EXCEPT FOR: (Points : 5)
a single, circular chromosome
most commonly reproduce by asexual fission
having membrane enclosed organelles
small in size and can only be seen with a microscope

4. Protists ____________. (Points : 5)
are prokaryotic cells.
have a nucleus.
are most closely related to animals.
live in dry environments.

5. Viruses are __________ (Points : 5)
prokaryotic cells.
eukaryotic cells.
non-living particles.
large in size.

6. Angiosperms produce all of the following EXCEPT __________ (Points : 5)
flowers.
fruit.
pollen.
cones.

7. An organism is multicellular, has cell walls made of chitin, and absorbs its food. In which Kingdom does it belong? (Points : 5)
Animalia
Fungi
Plantae
Protista

8. Dissolved sugar is carried throughout the plant in which tissue? (Points : 5)
cortex
xylem
cambium
phloem

9. Characteristics of animals include all of the following EXCEPT FOR: (Points : 5)
multicellular
unwalled cells
capable of photosynthesis
have the ability to reproduce sexually

10. Which of the following statements is TRUE? (Points : 5)
Mammals are invertebrates.
Invertebrates have a backbone.
There are more species of invertebrates than vertebrates.
Arthropods are the least abundant species.

11. Where is bile produced? (Points : 5)
the gall bladder
the pancreas
the liver
the small intestine

12. The sites of gas exchange in the lungs are the ____. (Points : 5)
bronchioles
alveoli
bronchi
integument

13. The functional units inside of kidneys are the ____. (Points : 5)
sarcomeres
ureters
malpighian tubules
nephrons

14. ___ tissue allows a body to detect and respond to internal and external changes. (Points : 5)
Epithelial
Muscle
Connective
Nervous

15. Which blood vessels return the blood to the heart from the lungs? (Points : 5)
pulmonary arteries
pulmonary veins
systemic arteries
systemic veins

16. The relationship between a flowering plant and mycorrhizal fungi is an example of ___. (Points : 5)
commensalism
parasitism
mutualism
predator/prey interaction

17. Currently, the human population is nearing ___. (Points : 5)
275 million
3 billion
7 billion
9 billion

18. Which of the following organisms would be found at the lowest trophic level of a food chain? (Points : 5)
rabbit
hawk
mushroom
oak tree

19. Which of the following is not considered a density-dependent factor? (Points : 5)
An infestation of parasites on a deer population
Competition for nesting sites for bald eagles
Predation of cheetahs on a population of gazelles
A hard freeze on a plant population

20. A keystone species ___ (Points : 5)
nfluences the survival of several other species within a community.
never goes extinct.
has little impact on the ecosystem.
has the largest population in an ecosystem.

 
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BIOLOGY QUESTION

ASSIGNMENT 1:

Background

Biotechnology allows the use of living organisms or their processes for human needs or purposes. Currently, this topic includes such general examples as cloning, stem cells (adult, umbilical cord, and embryonic), DNA fingerprinting, biological warfare, bioremediation, genetically modified organisms, vaccines, and transgenic plants and animals to name a few. In this assignment, you will explore specific examples of biotechnology applications.

Assignment Details

Part 1

Biotechnology is the use of a living thing or any part of a living thing to make a product or process that improves human life. For this part of the assignment, discuss the following:

· What are some of the examples of biotechnology that have made improvements to your life?

· Describe how one of these has made your life better.

· Do you have any concerns with biotechnology? Explain.

Part 2

In 2008, the Food and Drug Administration (FDA) approved food derived from cloned animals. In addition, these products will not need to be labeled as “cloned” or “from clones” (Black, 2008). The FDA explains that you will not be eating the clone itself. It takes thousands of dollars to clone a food animal such as a cow or pig. Animals that are cloned for improved food production will be used for a breeding program to produce many offspring with the desirable traits for increased meat or milk yield. These offspring of the clones will be fair game for food. Discuss the following:

· Do you think there are differences between a clone and a “normal” animal?

· How do you feel about eating a cloned animal?

· Is your opinion of eating a cloned plant different?

Reference

Black, R. (2008). U.S. approves animal clones as food. Retrieved from the BBC News Web site: http://news.bbc.co.uk/2/hi/7190305.stm

Provide references in APA format. This includes a reference list and in-text citations for references used throughout the assignment.

 

ASSIGNMENT 2:

 

Using the Laws of Inheritance

Gregor Mendel’s studies laid the foundation for modern genetics. In a series of elegant experiments, Mendel was able to deduce the most fundamental laws of single-gene and multiple-gene inheritance without having the scientific data on chromosomes, their structure, or meiotic segregation. In this lab, you will learn about and apply examples for 3 different patterns of human inheritance of traits.

In this lab, you will view information and complete activities to answer the following questions about genes and inheritance:

· What is a Punnett Square? How can it be used to analyze possible genetic outcomes for offspring?

· What is dominant/recessive inheritance?

· What is X-linked inheritance?

· What is codominant inheritance of genes?

Using the M.U.S.E. link, review the background information and animation to complete your report. Use the lab 3 worksheet for assignment instructions and data collection.

LAB 3 worksheet: (Please put in separate word document)

 

Student Sheet

Name:

 

Date:

 

Instructor’s Name:

 

Assignment: SCIE207 Phase 3 Lab Report

 

Title: Lab to Determine the Outcome of Heredity

 

Instructions: You will fill out the Punnett squares and answer a set of questions for each exercise.

 

When your lab report is complete, submit this document to your instructor in your assignment box.

 

Using what you learned on the lab animation (and the images below), you will fill in the following Punnett squares and answer the questions that follow:

 

Exercise 1: Color Blindness

 

A. Choose the parental gametes, and align these in the correct positions around the Punnett square. (Type in the correct gametes. Pink are the female gametes, and blue are the male gametes. XC is the gene for normal vision, and Xc is the gene for color blindness.)

 

 

Xc

X

B

XcB

Y

 

C

 

B. Choose the correct genotype of the progeny to fill in the Punnett square.

(Type the correct genotypes in the boxes.)

 

 

 

XCY

 

XcXC

 

XcY

 

XcXc

 

 

 

 

 

 

______ ______

 

 

 

 

 

______

 

 

 

 

 

 

______

 

 

 

 

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are the possible phenotypes of their children?  
What is the probability of the color blind trait in female children and the probability of the color blind trait in male children?  
X and Y genes code for male and female gender. XX is female and XY is male. Why is XcY color blind, but XcXC not color blind? Can an XcXC female pass the color blind trait to her children?  

 

 

Exercise 2: Freckles

 

C. Choose the parental gametes and align these in the correct positions around the Punnett square. (Type in the correct gametes. The pink are female gametes, and the blue are male gametes.)

 

 

f

F

f

F

f

 

 

 

 

A. Choose the correct genotype of the progeny to fill in the Punnett square.

(Type in the genotypes.)

 

 

FF

 

FF

 

ff

 

Ff

 

 

 

 

 

 

 

______ ______

 

 

 

 

 

 

ff

 

Ff

 

______

 

 

 

 

 

 

 

ff

 

Ff

 

 

______

 

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are the possible phenotypes of the children?  
What is the probability of freckles in their children?  
Freckles in humans are inherited by which pattern: dominant/recessive, incomplete dominance, or codominance? Why does the mother have freckles, even though she has a gene for no freckles? Why does the father have no freckles?  

 

 

 

Exercise 3: Blood Type

 

A male has Type A blood, and a female has Type B blood. Could they have a child with Type O blood? Demonstrate how this is genetically possible by filling out the Punnett square.

 

Choose the correct parental gametes from all of the potential blood type gametes below, and align these in the correct positions around the Punnett square. (Type in the correct gametes. The pink are female gametes, and the blue are male gametes.)

 

IA

IB

IA

IB

IB

IA

i

i

 

 

 

 

A. Choose the correct genotypes of the progeny, and fill in the Punnett square.

(Type the correct genotypes into the boxes from the possible genotypes shown below).

 

 

IAIA

 

IAIA

 

IBIB

 

IBIB

 

IAIB

 

IAi

 

 

 

IBi

 

ii

 

 

 

 

 

 

______ ______

 

 

 

 

IAi

 

IAIB

 

 

______

 

 

 

 

 

 

ii

 

IBi

 

 

______

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are possible phenotypes of their children?  
What is the probability of Type AB blood in their children?  
Ms. Johnson is suing her former husband for potential child support payments for her 2-year-old child. Mr. Johnson’s attorney forcefully denies the fatherhood of his client, stating that the child of Ms. Johnson has blood type O, while the blood type of Mr. Johnson has Type A blood. The lawyer claims that Mr. Johnson cannot be the father of a child with Type O blood. Is the attorney right? Why or why not? Explain your answer.
 
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Human Genetics

Name:____________________

MMG 404 F2015 Homework # 7

12 points

due Oct. 20, 2016

1.. A certain large population is found to exhibit a frequency of 3% for an autosomal recessive trait, i.e. 3 people out of 100, on average, have the trait (assume 100% penetrance). Assuming the alleles are in Hardy-Weinberg equilibrium, calculate the expected carrier frequency. When actually tested, it was found that the carrier frequency was 15%. Suggest one possible explanation for this non-equilibrium value.

2. a. A biallelic locus, Aa, has allele frequencies of A = 80% and a=20% in a certain population. Another biallelic locus, Bb, has allele frequencies of B = 90% and b = 10% in the same population. Both loci are found to be in Hardy-Weinberg equilibrium. Calculate the expected percentages of each of the AA, Aa, aa, BB, Bb, and bb genotypes in the population.

AA= Aa= aa=

BB= Bb= bb=

b. A recessive digenic disorder (100% penetrant) occurs ONLY when one has the aabb genotype. It’s found that 15 people out of 10,000 in this population have the disorder. What would be the expected frequency of the disorder if the Aa locus and the Bb locus were segregating independently? Is the actual frequency significantly different from this?

3. A very rare disorder is shown to depend on the genotype at three unlinked autosomal loci, A/a, B/b and C/c and that to be affected one must be homozygous for the rare allele at all three loci, that is, aabbcc. The MZ twin disorder concordance is 100%, implying that the penetrance is 100%. Calculate the expected dizygotic twin concordance for presence of the affected trait, that is, if one DZ twin shows the trait, what is the chance that the 2nd twin will be affected? (Hint: because the trait is rare, assume that both parents are heterozygous for all three loci. This is NOT the probability that both twins are affected among all DZ twin pairs.)

 
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Biological Anthropology Zoo Project

Zoo project

INTRODUCTION: This assignment is designed to help you learn more about and

observe in real time some of the primates we have studied in our course, in this

case the chimpanzee. Besides your zoo visit, your final written report should

reflect thoughtful consideration of the assigned readings. The report will be based

on a description of the events in the chimp enclosure over period of 45 minutes

(minimum). Judge your time wisely and make sure to follow all the directions

presented below here. A total of 15 points may be earned IF you follow all

directions and present a well-prepared report (with ticket attached) by the

A. GRADING: Points will be awarded according to how your report covers the

following issues:

1. Describe enclosure and compare it to chimp natural habitat 3 points

 

2. Identify individual chimps as Adult Male-1; Adult Female-1; Juvenile Male-

1; Juvenile Female-1, etc. [If this is difficult, try another way to identify the

subject of your comments.] Describe at least one interaction/behavior, anything

from fast moving to just “lounging together” while grooming, etc. 5 points

3. Integrate key ideas from assigned readings* and clearly relate them to these

L.A. Zoo chimps. 5 points

4. Organize, proof read, and include a “mug shot” with admission ticket

2 points

TOTAL POINTS…15

* Required readings:

a. Review Ch. 7 (pp.167-68) and Ch. 8 (pp.180-89) for info on the primates,

in this case the chimpanzee

b. Read “The 2% Difference,” in ANNUAL EDITIONS: Physical

Anthropology 08/09 edition. See also in Discover Magazine, April 2006;

available on-line at http://discovermagazine.com/2006/apr/chimp-

genome.

ANNUAL EDITIONS (08/09)reference to the attendant. Make sure to read these selections before you go to the

Zoo.

B. KEEP IN MIND: When you walk up to any animal enclosure, the behavior

may appear to be erratic or random; maybe “nothing” is happening. However,

much of the behavior is patterned in response to a stimulus not necessarily evident

to us. Be patient. The best you can do is to carefully & accurately describe their

physical activity & note its context at the time. There is no magic bullet! Do your

best.

The Enclosure. If you include photos, do provide SHORT CAPTIONS. If you are

artistic, make a sketch of the enclosure and include it with your report. While there

is no ironclad page count for this project, please do not use pictures & drawings as

fillers! Your thoughts are paramount.

C. DRAFTING YOUR REPORT: After you have completed your observations,

go aside and carefully read over your notes. Are there any notable behavior

patterns, anything that indicates relationships, friendships, or pecking order? You

should draw on the physical characteristics of the chimpanzee provided in Ch. 8.

Integrate key information from the other required readings. Omit it and you will

lose points. Don’t fret; a good faith effort is what counts here.

D. ORGANIZING YOUR REPORT: A good report will be well organized

around the “Grading” topics. About four to five pages (double spaced) is

acceptable. This does NOT include your cover page, any photos, charts or maps.

Use one-inch margins and avoid “padding” with empty spaces between sections or

paragraphs. Most of all, sincere work and a true learning experience is what we

are after here. Your instructor’s “eagle eye” can spot the proverbial fluff and “b.s.”

Do a good job and shine!

 
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