Lab Assignment

Make sure to do all steps.

 

Unit 4

Work through the following genetics problems and submit their answers as part of the introduction to your lab report.  Please show your work!  You will not receive full credit for problems that only have an answer! The problems belong in your introduction portion of the lab report.

1. Both a man and a woman are heterozygous for bent little fingers. Bent little fingers are dominant over straight little fingers. What is the chance that their child will have bent little fingers?

2. Both a brother and a sister do not have freckles, but their parents have freckles. Freckles (F) are dominant over no freckles (f). What are the genotypes of the parents?

3. A father is far-sighted, the mother has normal vision, and all five of their children are far-sighted. Being far-sighted (F) is dominant over having normal vision (f). Give the probable genotypes of all persons concerned.

4. A woman is heterozygous for polydactyly (which is a dominant condition in which a person has more than the normal number of fingers and/or toes). The woman has a child with a man who is homozygous normal. What is the chance that their child will have more than ten fingers and/or toes?

5. Sarah can’t curl her tongue – which is a recessive trait. Both of her parents can curl their tongues – which is dominant. Give the genotypes of all persons involved (use T and/or t in the genotypes).

6. A man has type AB blood and his child has type B blood. What are all of the possible blood types of the child’s mother? (Hint: think about the genotypes of blood types.  You will need to work more than one Punnett Square.)

7. A child who does not have dimples or freckles is born to a man who has dimples and freckles (both dominant) and a woman who does not. What are the genotypes of all persons concerned?

Try typing in “Baby Steps Through Punnett Squares” in your search engine or try this site:

http://www.sbs.utexas.edu/sanders/bio309/Lectures/2006/Punnet.htm (Links to an external site.)

Tips:

  • Be sure to show your work!  If you give me answers only, I will not give you full credit.  Use graphs/Punnett squares, explain your logic, etc.
  • Try out several blood types on #6.  Using the actual genotypes is very helpful.
  • Be aware that on #7 we have 2 traits, so a complete genotype will have 4, not 2 letters for each person. It is called a Dihybrid Cross.

LAB ASSIGNMENT

For this weeks lab, you will be using a tool called the virtual genetics lab. Here you will create crosses of experimental animals and try to predict what mode of inheritance your organisms have. This lab requires that you complete 3 crosses in the software, the first one is practice with the answer and two additional experimental crosses in which there is no answer, you must make crosses until you are sure that you have enough evidence to reject or support your hypothesis.

VirtualGeneticLabNewton2019.pdfPreview the document

Website needed to download the virtual genetics lab: http://vgl.umb.edu/ (Links to an external site.)

Upload your lab report, including the information from all 3 crosses as your experiment.

 
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Lab Report

Then, read my explanation of sexual selection:

Sexual selection is a type of natural selection that occurs due to variation in mating success. For example, have you ever wondered why birds-of-paradise (or many other birds) are brightly colored? And why is it typically only the male birds that are so colorful? The male birds court the female birds through color, unique morphological features, songs, and dances. Males that display elaborate versions of these qualities are more desirable to a female, because this informs the female that he is healthy, strong, and intelligent. Essentially, he is persuading the female that his genes are the most desirable. Thus, the males with the most extravagant features are chosen as mates and these traits for bright coloration or elaborate morphological features (or behavior) are  passed  on to offspring. Consequently, these traits become more frequent within the population. Over time, as these traits are selected for over and over again, the features become more and more exaggerated, even as they begin to interfere with survival (think conspicuous colors that prevent camouflage or large tail feathers that interfere with flight). Visit https://evolution.berkeley.edu/evolibrary/article/evo_28 (Links to an external site.) for more information on sexual selection (and many other biological topics).

The concept of sexual selection gives us some background on our experiment.  In our experiment last week, we assessed mate choice in guppies. More specifically, we tested whether females would prefer males with large, showy fins over males with small fins, and whether males would choose larger females over smaller females.

I have attached the data , use it to do this :

In excel, calculate the mean, standard deviation, sample size, and standard error, as well as confidence intervals, for male and female mate choices. Graph the two means and add custom error bars to those means using the confidence interval values, and include a figure caption. Additionally, please answer the following questions in a textbox within your excel sheet:

1. What did you hypothesize before the start of the experiment?

2. Does the data provide evidence to support your hypothesis or hypotheses? Explain (In other words, interpret your graph).

3. Could the experimental design be improved? How so? (Hint: Think about sample size and replicates,  subjectivity in individually assessing 1. distance to mate choices and 2. preferred verses non-preferred traits, or interference that may affect behavior like movement and light changes, etc.) Is our data reliable?

4. How does this experiment relate to the concept of sexual selection? (Hint: Mate choice based on coloration and morphological features)

Please upload your assignment as an excel file titled Yournamefish.xxls.

 
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Power Point

In the mid-1950s, the first study linking cigarette smoking to lung cancer was published. In the decades that followed, many other studies supported this finding and a host of other health-related effects attributed to smoking were uncovered.

Over the last few decades, cities and states have created local regulations prohibiting smoking in certain public places. In 2009, the U.S. Food and Drug Administration was given regulatory authority of all tobacco products.

Chapter 20 of your textbook begins with a comparison of two sources of inhalable nicotine: traditional tobacco cigarettes and E-cigarettes. Because E-cigarettes are a relatively new technology, less is known about the long-term effects of the firsthand and secondhand inhalation of vaping products. However, in recent years they have been treated and regulated similarly to traditional cigarettes.

Your assignment for this unit is to create a 10- to 12-slide PowerPoint presentation that covers the following elements:

  • the anatomy and physiology of respiration (e.g., explain how breathing works);
  • the effects of the inhalation of smoke and E-cigarette vapor on gas exchange in the lungs;
  • specific diseases associated with smoking, both pulmonary and cardiovascular; and
  • lastly, based on what you know about E-cigarettes from the reading and your own research, defend or oppose the regulation of vaping products as traditional cigarettes.

You will need to cite and reference at least one article from the CSU Library databases as one of your sources of information.

CSU Library Database Instructions

  • Open the CSU Online Library link in your student portal.
  • Under “discovery search,” click the tab for “articles.””
  • In the keyword search field, type keyword “vaping” and/or “E-cigarette” to find articles that cover this topic. You may get different results doing separate searches for each keyword. The keywords “electronic cigarette” may also be used.
  • From the list of available articles that comes up, select one that interests you.
  • Click on the article link, then click on “PDF full text or HTML full text,” and read the article. (Note: Not all articles will provide the full text; if your choice does not, you will have to select a different article.)
  • Discuss what you learned from your chosen articles in 1-2 slides in your presentation. Cite the article according to APA guidelines, and list it on your references slide.

PowerPoint slides should not contain a lot of text; use speaker notes to provide the details of your presentation. The general practice is to use no more than 5-6 bullet points per slide. The quality and depth of your speaker’s notes will be significantly factored into your grade.

Title and reference slides should be included. These do not count toward the 10- to 12-slide requirement. In addition to providing references on a reference slide, you need to cite your material in the slides as appropriate; use APA format for your references and citations.

Suggestions for Searching for Illustrations

Use at least 3 images in the presentation. When looking for illustrations to use, it is suggested that you type the subject into a search engine and click “images.” For your presentation, you are allowed to copy and paste images (being sure to cite and reference them). However, you are NOT allowed to copy and paste content, such as text, tables, and the like. As much as possible, your presentation needs to be in your own words.

PowerPoint Guidance

Do you need to refresh your knowledge concerning PowerPoint? Review this tutorial on PowerPoint Basics.

  • Click on the Notes tab on the right side of the tutorial screen to see a transcript of the PowerPoint webinar.
  • You can also search online for information concerning best practices about what should and should not be done when creating a PowerPoint presentation.

Notes:

  • As directed in the tutorial above, pay attention to the background and font colors in your presentation—try to avoid using plain black text on a white background, but also avoid using colors that are visually difficult to see (such as yellow text on a light background) or that are unpleasant (such as red text on a yellow background). Strive for a pleasing, visually appealing appearance.
  • Reminder: The speaker notes should provide the detail and discussion of your presentation, and everything in the presentation should be in your own words, not copied and pasted from a source.
 
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Lab Assignment #5

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 1

Lab 5: Solvents and cells

Part 1: Chemistry of Molecules Read/watch the provided resources and take notes, applying the information to what we learned this week. CO2 and Soda: https://www.youtube.com/watch?v=HFCeV5BVBh0 Dissolving M&Ms: https://www.youtube.com/watch?v=umJmRaG6v80 When you are finished, answer the following questions: 1. You are having a debate with a friend about the science behind the Diet Coke and Mentos phenomenon. Your friend thinks that since the volume of matter after the experiment (the big mess) seems to be more than what was originally present in the individual components (soda/Mentos) before they were combined, that the “explosion” is the result of carbon dioxide being produced (made) by the reaction. Is this true? Does the amount of carbon dioxide increase through this reaction? Use what you’ve learned this week to verify or debunk your friend’s argument.

2. During the M&Ms experiment, why did the scientist emphasize that each of the treatments in this experiment needed to be stirred the same say, for the same length of time?

3. For the M&M experiment, name and describe the chemical property that is demonstrated by both the sugar and the candy coloring in the shell of an M&M that permits dissolution in the water, but not in the oil.

4. In your own words discuss this quote. Was Jamf mistaken in his understanding of the relative strengths of ionic and covalent bonds? Explain why/why not (in your own words!).

 

5. The scientific field of organic chemistry is based entirely on studying the chemical structure and reactivity (bonds and chemical reactions) of carbon containing molecules. Based on what you learned in class this week, discuss why carbon is so important that entire fields of study are dedicated to understanding and applying it.

 

 

 

 

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 2

Part 2: A Picture is Worth a Thousand Words This unit we learned about cells, their structure, and how they carry out the processes of life. We know that there are size restrictions that prevent living cells from being too small or too large. However, the rules that govern cell size may be more complex than scientists originally thought. The existence of ultra-small living cells has been debated for two decades. This debate was settled in February of 2015, when researchers from the U.S. Department of Energy’s National Laboratory at UC Berkeley obtained the first microscopy images of ultra-small bacteria- about as small as life can get. Follow this youtube link to view the research images/reconstructed videos of the cell structure: https://www.youtube.com/watch?v=ofNrtg-FpSc; primary article may be provided upon request. This part of the lab will focus on a popular media ScienceDaily article that summarizes the researchers’ findings. However, before we investigate these ultra-small nanobes, it is important that we fully comprehend the history and scientific impact behind this debate. For this, you’ll need to read the following extract: “In 1996, researchers published a description of a meteorite that fell from Mars, which sparked a long and complicated debate over the existence of what they called ‘nanobacteria’, later also described as nanobes. Various teams argued over whether life, theoretically, could live to be that size, but the debate didn’t really get anywhere because no one really had any evidence for either side. One side said all the things needed for life – DNA, RNA, proteins and solvents – couldn’t actually fit inside a cell that small, while others said life could be that small, but just in a starved, inactive state. Researchers argued over the theoretical limit for how small a cell could get in diameter and volume, and one team even reported finding some marine nanobes, but lacked direct microscopic evidence to prove they fit inside the size range to classify them as such. But now, such bacteria found in some Colorado groundwater have been imaged, and these things are undeniably tiny – several times tinier than several estimates for the lower size limit of life on Earth, in fact. And as difficult as it is to see them, the researchers think they could actually be quite common.” http://www.sciencealert.com/new-images-reveal-the-tiniest-known-life-forms-on-earth Next, click the link to read the article describing researchers’ findings and use this information, along with what you learned this week to answer the provided questions. https://www.sciencedaily.com/releases/2015/02/150227181339.htm When you are finished, answer the following questions: 6. The image at the beginning of the ScienceDaily article shows and describes the visible structure of the cell, and the authors state: “The cell has a very dense interior compartment and a complex cell wall.” As you remember from your readings, not all cell types contain a cell wall. What kinds of cells, other than bacteria, would you expect to possess a cell wall? List the

 

 

Lab 5: Follow the instructions and complete the assignment below. Submit your answers through the Lab 5 Assignment on Blackboard.

Lab 5 3

functions that this structure provides for these organisms. How do organisms that don’t have a cell wall execute these same functions? 7. The image at the beginning of the ScienceDaily article shows and describes the visible structure of the cell, and the authors state: “The darker spots at each end of the cell are most likely ribosomes.” Of all the different structures that could exist within a cell, why do you think that the authors think that these are ribosomes? (Hint: think about the types of cellular structures that are/aren’t found within bacteria, and what ribosomes do, and the importance of that job, within a cell.)

8. Interestingly, the ScienceDaily article states: “images also revealed dividing cells, indicating the bacteria were healthy and not starved to an abnormally small size.” This statement implies that in order for cells to divide they must be “healthy”. Discuss the requirements that a “healthy” eukaryotic cell must meet before it will under cell division. What are the consequences if a eukaryotic cell divides even if these requirements are not met? 9. The ScienceDaily authors state: “About 150 of these bacteria could fit inside an Escherichia coli cell and more than 150,000 cells could fit onto the tip of a human hair”. To provide you with some context so that you can really understand this statement: the spherical diameter of a

typical Escherichia coli cell is 1.3 m (micrometers), and the spherical diameter of these new

ultra-small bacteria is ~0.23 m. Compare the SVR of these new ultra-small bacteria to that of a typical E. coli cell (Hint: you need to calculate the SVR for each), which organism has a larger SVR, does this make sense in the context of the size of the cell? 10. Throughout the ScienceDaily article, the researchers studying these tiny bacteria acknowledge the challenges that such small cells face when it comes to performing the basic functions of life, and the additional challenges that limit our ability to study such small organisms. This makes sense, considering that previously calculated theoretical minimum diameter of a cell was established (and generally accepted by respected scientists and experts

in the field) to be 0.250-0.30 m. The authors say, “There isn’t a consensus over how small a free-living organism can be, and what the space optimization strategies may be for a cell at the lower size limit for life.” Why, before this, did scientists think that living cells couldn’t be much smaller than this lower limit (why is it that when a cell is too small, that it “can’t” survive)?

11. Choose another statement/quote from this article (or the other summary or the original research paper) and discuss how it relates to the material that we learned this week. Be sure to use specific examples (and your own words).

 
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Photosynthesis

To submit this assignment, students will complete the Lab Worksheet on pages 7-10, then upload their completed document as a DOC or PDF file in Canvas

 

BIO 101 Lab 08: Photosynthesis

 

Notification: If you have a disability that makes it difficult to complete this lab, please contact your instructor. Please provide your instructor a copy of the Memorandum of Accommodation (MOA) from NVCC Disability Support Services.

 

Objectives:________________________________________________________________

· Determine the effects of light on the rate of photosynthesis

· Determine the absorption spectrum of leaf pigments

 

Background:_______________________________________________________________

Sunlight provides the majority of energy for organisms living in most ecosystems, however only a subset of organisms are capable of harvesting this energy. Plants use their chloroplasts to absorb the energy from sunlight. This energy is then stored in the covalent bonds of glucose, a simple sugar, and can be used by the plant for structural purposes (cellulose), as usable energy (ATP generation), or for energy storage (starch). Animals can eat plants to obtain glucose and produce energy through a process called cellular respiration.

 

The overall reaction for photosynthesis is represented by the chemical equation:

 

6 CO2 + 6 H2O + sunlight → C6H12O6 + 6 O2

 

The entire process is complex and involves many enzymatic reactions. You may notice that the photosynthesis reaction is nearly the exact reverse of cellular respiration. From the equation above the three key elements for photosynthesis to occur are carbon dioxide (CO2), water (H2O), and light. If any of the three are missing from the system then photosynthesis will not occur, and glucose production in the plant will be negatively affected.

 

 

 

 

 

 

 

 

 

 

 

There are two phases of photosynthesis: H:\BIO101 Lab Manual edits\BIO101 XZ VB AS revision 2017\Edited AJS\512px-Simple_photosynthesis_overview.svg.png

 

1) In the light-dependent phase chlorophyll molecules located in the thylakoid membrane stacks of the chloroplasts absorb the energy from light resulting in the production of ATP and NADPH.

 

2) In the light-independent reactions (the Calvin Cycle) the energy stored in ATP and NADPH is used to ultimately convert carbon dioxide to sugar. The process of taking carbon dioxide from the air to build carbohydrates is called carbon fixation.

 

 

In solution, CO2 can be converted to carbonic acid (H2CO3) when dissolved in water. The carbonic acid will then release hydrogen ions (H+), causing the pH of the solution to decrease.

 

CO2 + H2O H2CO3 HCO3- + H+

 

Bromothymol blue is a pH indicator that changes color based on the pH of a solution. Bromothymol blue turns yellow at lower pH and blue as the pH is increased. This indicator can be used to track respiration (turns yellow as CO2 is added to the system) or photosynthesis (turns blue as CO2 is consumed).

 

Different colors of Bromothymol blue at the indicated pH conditions

 

Light energy is a small part of the electromagnetic spectrum which is visible to the eye. The wavelength of visible light lies between 380 nm and 760 nm. In order to obtain the energy from light, plants must absorb light energy using pigments, namely chlorophyll a, chlorophyll b, carotene and xanthophyll. These pigments show characteristic colors because they do not absorb all light equally. By measuring the absorbance at different wavelengths, the absorption spectrum of the leaf pigments can be obtained.

Materials:__________________________________________________________________

· Internet

 

 

 

Safety:

Follow all standard laboratory safety procedures.

 

Procedure:________________________________________________________________

 

Experiment 1. Observing photosynthesis (work in groups)

1. In the laboratory, you would add about 60 ml of tap water into a beaker and then add about 1 mL of bromothymol blue to the water in the beaker.

 

2. Using a clean straw, you would then gently blow into the solution until the color of the solution turns yellow.

 

3. You would next fill three test tubes 2/3 full with this yellow-colored solution.

 

4. Then, you would place a 3-inch cutting of Elodea into Tube 1 and another 3-inch cutting of Elodea into Tube 2, making sure that the cuttings were completely immersed in the solution. After this, you would wrap Tube 1 with green film. Tube 3 will be left alone and will not contain a plant cutting.

 

5. Watch the following video about setting up the photosynthesis lab from time 0:00 until 5:46.

https://www.youtube.com/watch?v=GWUawtweJGM

 

Ignore the use of a second plant in the video, we only use Elodea in this laboratory activity. In the video, Tubes 1 and 2 contain Elodea plant cuttings and Tube 1 is wrapped in foil instead of green film.

In our photosynthesis lab experiment, we wrap Tube 1 in green film, which only allows green-colored light to reach the Elodea plant cutting. The green film we use ends up having the same effect as the aluminum foil used in the video.

 

6. In Table 1 in the Lab Worksheet, record the color of the solution before blowing into it in the “before exhaling” column.

 

7. In Table 1 in the Lab Worksheet, record the color of the solution after blowing into is in the “after exhaling column.

 

8. Answer question 1 in the Lab Worksheet

 

9. In the laboratory, you would then place the test tubes in front of a light source such as a fluorescent lamp. You would allow the tubes to be exposed to the light for 1 hour.

 

10. Record the color of the solution in each test tube in Table 2 of the Lab Worksheet

 

11. Make a hypothesis about how the color of bromothymol blue solution in each test tube will change and record the color you expect for each tube in Table 2 in the “Expected Color after 1 hour of light exposure” column.

 

When making a hypothesis, consider why the pH-indicating solution turned color in the first place and what might happen if the substance that caused the color change was removed by a plant performing photosynthesis.

 

12. Watch the following video showing the results of photosynthesis lab from time 0:00 until 2:41.

https://www.youtube.com/watch?v=SZsQG_rPJwQ

In the video, Vial A corresponds to Tube 1 in our photosynthesis lab experiment. Ignore Vial B from the video. Vial C in the video corresponds to Tube 2 in our photosynthesis lab experiment and Vial D in the video corresponds to Tube 3 (the control).

Note that in our photosynthesis lab experiment, we wrap Tube 2 in green film, which only allows green-colored light to reach the Elodea plant cutting. The green film we use ends up having the same effect as the aluminum foil used in the video.

 

13. Using the results diagrammed below, fill in Table 2 in the Lab Worksheet

 

 

14. Record the color you observe for each test tube in Table 2 in the “Observed color” column.

 

15. Answer questions 2 – 3 in the Lab Worksheet.

 

 

Experiment 2. Absorption spectrum of leaf extract (work in groups)

1. In the laboratory, you would first turn on the spectrophotometer and allow it to warm up for 15 min.

 

2. You would then insert the blank cuvette (which contains alcohol) in sample holder marked “B” and the cuvette containing leaf extract in sample holder “1”, making sure that the orientation of the cuvettes is correct.

 

3. Then, you would select a wavelength to measure and calibrate the spectrophotometer by measuring the absorbance of the blank cuvette at this wavelength. You would then see the absorbance reading set to 0.

 

4. Now, you would measure the absorbance of the cuvette containing the leaf extract and record the absorbance in Table 3 in the position corresponding to the wavelength you selected.

 

5. You would repeat steps 3 – 4, changing to a different wavelength each time, until all the wavelengths in Table 3 had been measured. Record absorbance readings in Table 3.

 

6. Watch the following video about using a spectrophotometer from time 0:00 until 4:43.

https://www.youtube.com/watch?v=C-M7EtSuD40

Note that the video uses a tube containing a red liquid, while in our photosynthesis lab, we would use a tube containing leaf extract (which would appear green) as our sample tube and a tube containing alcohol (which would be transparent) as our blank tube.

 

7. Table 3 has been partially filled in for you in the Lab Worksheet. Complete Table 3 by filling in the color of light that corresponds to the grouped wavelengths.

 

8. Answer question 4 by making a Line Graph of the data in Table 3.

 

9. Answer questions 5 and 6 based on your Line Graph

 

10. Answer question 7 based on the results of both Experiment 1 and Experiment 2.

 

BIO 101 Lab 08: Photosynthesis Worksheet

 

Name: __________________________ Section: ______________________

 

Data Analysis and Synthesis Questions:

 

Table 1. pH-indicating dye color

Color before exhaling into beaker Color after exhaling into beaker
   

 

1. Why did the solution in the beaker change color after you exhaled?

 

 

 

 

 

Table 2. Observing Photosynthesis

Tube Color before 1 hour of light exposure Expected Color after 1 hour of light exposure Observed color after 1 hour of light exposure
1

(Elodea + green film)

     
2

(Elodea)

     
3

(no plant)

     

 

2. In this experiment , what is the purpose of the tube without the plant?

 

 

 

 

 

 

3. Explain the color change or lack of color change in the three experimental tubes:

 

a. Tube 1:

 

 

 

 

b. Tube 2:

 

 

 

 

c. Tube 3:.

 

 

 

 

Table 3. Absorbance of Different Wavelengths of Light

Color of Light Wavelength (nm) Absorbance   Color of Light Wavelength (nm) Absorbance
  400 0.58     575 0.09
  425 0.82     600 0.12
  450 0.61     625 0.16
  475 0.44     650 0.23
  500 0.22     675 0.53
  525 0.08     700 0.04
  550 0.06     725 0.05

 

 

 

 

4. Make a Line Graph of the absorbance readings versus the wavelength of light data from Table 3. Be sure to include x-axis and y-axis labels and a chart title.

 

 

 

 

 

 

 

 

 

5. Which wavelength(s) and colors of light are most effectively absorbed by leaf pigments (where are the peaks in your Line Graph)?

 

 

 

 

 

 

6. Which wavelength(s) and colors of light are poorly absorbed (where are the valleys in your Line Graph)?

 

 

 

 

 

 

7. Draw a general conclusion about which color(s) of light are best for plant growth based on your data from both the measurement of absorbance of light in leaf extracts and the observations of CO2 use by Elodea cuttings in different light conditions.

 

 

 

 

 

 

 

 

 

 

BIO 101 Lab 08: Photosynthesis 10
 
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Bio Homework Lab

Genetics Review

 

This assignment will make up for the two genetic labs that we would of done if we were meeting face to face. I will have you do various things to help you grasp the material. We would of done A LOT of Punnett squares in lab. If you are having trouble please contact me.

 

1. Match the correct definition to the term in the table below. Type the letter in the table.

 

A. Alternative form of a gene, located at a specific point on chromosome. (DNA coding that will determine distinct traits)

B. Having two identical alleles for a given gene

C. A unit of hereditary information with a specific sequence in DNA.

D. Having two different alleles for a given gene.

E. Breeding an organism of an unknown genotype with an organism with a homozygous recessive genotype. The offspring phenotype will determine the unknown genotype.

F. The genetic makeup or set of alleles of an organism

G. Allele’s phenotypic effect is not observed in a heterozygote

H. Allele’s phenotypic effect is fully expressed in a heterozygote

I. A cross done to determine if a gene is located on an autosome or sex-chromosome.

J. The physical traits of an organism determined by genetic makeup.

 

Term Definition Letter
Gene  
Allele  
Genotype  
Phenotype  
Homozygous  
Heterozygous  
Recessive Allele  
Dominant Allele  
Test Cross  
Reciprocal cross  

 

 

 

 

Star Wars Genetics – Monohybrid Crosses

 

Watch the following video to review on Monohybrid crosses.

https://www.youtube.com/watch?v=i-0rSv6oxSY

 

Geneticists at Endor have been investigating the genetic makeup of the organisms in this community. You will work through a few problems to help them out.

 

2. Brown body color (B) is dominant to red (b). Chewbacca recently met Susiebacca at a dance. They don’t have to worry about social distancing there right now. Chewbacca is heterozygous for his brown hair, but Susiebacca has red hair. Fill in the Punnett square below to see the possibilities if the night went well and they were to have children.

 

On the table below type in your answers. The black square will be left open. The parental gametes will be in the gray squares. There should only be one letter in each of these squares. The white squares are the possible kids. There will be two letters in those squares. Use this info for each time you see this type of table. Be sure to answer all of the questions. Some have two parts.

 

     
     
     

 

 

a. What are the possible genotypes for their children? What is the ratio?

 

b. What are the possible phenotypes for their children? What is the ratio?

 

 

3. Everyone in Anakin Skywalker’s family has “The Force” (A) which is determined by the amount of metacholorian in the body. Having “The Force” is a dominant trait. His family brags that they are a “purebred” line. He recently married a nice girl, Amidala, who does not possess “The Force” (a). Create a punnett square to show the possibilities that would result if Anakin and his new bride had children.

 

     
     
     

 

 

a. What are the chances of a child with “The Force”?

 

b. What are the chances of a child without “The Force”?

 

c. Would Anakin’s children still be considered purebreds? Explain.

 

 

4. Wicket W. Warrick, general of the Ewoks and his wife recently had a Lil’ Ewok. However… this has not been a happy occasion for them. Mrs. Warrick has been upset since she first saw her new baby who has stripes. She claims the hospital goofed and mixed up her baby with someone else’s baby. Mr. Warrick is homozygous for his solid-colored fur, while his wife is heterozygous for her solid-colored fur. Solid (A) is dominant to stripes (a) in fur. Do the Punnett square to see if the hospital messed up.

 

     
     
     

 

 

a. List the possible genotypes of their kids. What is the ratio?

 

b. List the possible phenotypes of their kids. What is the ratio?

 

c. Did the hospital mess this one up or is it possible that it is their kid? Explain.

 

 

Dihybrid Problem (only one I promise)

 

Watch this video to remind yourself about dihybrid crosses.

 

https://www.youtube.com/watch?v=qIGXTJLrLf8

 

 

5. In horses, the coat color black is dominant (B) over chestnut (b). The trotting gait is dominant (A) over the pacing gait (a). If a homozygous black pacer is mated to a homozygous chestnut, heterozygous trotter.

 

In this table you will not have anything in the black square. The parental genotypes will be in the gray squares. You will have two letters in each gray square. The potential babies are going to be in the white squares. There will be four letters in those squares.

 

         
         
         
         
         

 

 

 

a. What are the parental genotypes?

a.

b.

 

b. What are the gamete combinations you got from the FOIL method for both parents?

a.

b.

 

c. What are the genotypes of the offspring and the ratio?

 

d. What are the phenotypes of the offspring and the ratio?

 

 

Sex-Linked Problems

 

Watch the following video to review yourself on sex-linked traits.

https://www.youtube.com/watch?v=h2xufrHWG3E

 

Be careful when answering these questions. They will be asking things specific to gender. Remember that Sex-linked problems tell us both the gender and the genotype/phenotype.

 

6. In humans, hemophilia is a sex-linked recessive trait on the X chromosome. If a female who is a carrier for hemophilia marries a male with normal blood clotting, answer the following questions.

 

     
     
     

 

 

a. What fraction of the female children will have hemophilia?

 

b. What fraction of the female children will be carriers?

 

c. What fraction of the male children will have normal blood clotting?

 

d. What fraction of the male children will have hemophilia?

 

 

7. Color-blindness is a sex-linked recessive trait on the X chromosome. Two normal vision parents have a color-blind son.

 

     
     
     

 

 

a. What are the genotypes of the parents?

 

b. What fraction of the male children will be color-blind?

 

c. What fraction of the female children be carriers?

 

d. What fraction of the female children will be color-blind?

 

 

Blood Typing Problems

 

Watch the video to review yourself on blood typing.

https://www.youtube.com/watch?v=9O5JQqlngFY

 

8. Suppose a father and mother claim they have been given the wrong baby at the hospital. They must have been at the same hospital the Ewoks were at. Both parents are blood type A. The baby they have been given is blood type O.

 

     
     
     

 

 

Is it possible it is their kid? Work out the Punnett square and explain your reasoning.

 
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310 Assignment 2

Build on Assignment #1. You will cover the same health problem and the same policy unless I state otherwise. Some remedial action on Assignment #1 may be required for students to proceed to Assignment #2. Complete the assignment using the table format provided below. Except for titles, narrative format is expected with complete sentences. The table should be single spaced and a maximum of two and a half (2.5) pages. Also include a cover page and a reference page in APA Format (these do not count toward the page limit). Except in the case of titles, use complete sentences, i.e. write using narrative format. No more than 15% of direct quotes or paraphrasing are permitted in the document. Review the bolded text in the Class Guidelines section of the syllabus above for formatting requirements.

HGMT 310 Assignment #2

Student Name:

Type your name here.

Assignment #2 Title:

Provide a unique short name of your assignment submission and official title of the federal policy or legislation.

Implementation:

Identify the federal (or state agency if the federal law places this on the states) and subunit (such as a department, bureau or office) responsible for implementing (putting it into effect) the policy. If multiple agencies are involved, indicate the roles and responsibilities of each.

Describe how the legislation is implemented? Any programs implemented as a result of the policy or law? Are local public health departments involved? Are collaborating organizations engaged to achieve the aims of the policy? Are citizen’s involved? Are health provider organizations involved? Are grants awarded to organizations to execute the policy (i.e. FDA, CDC, etc.)?

Enforcement:

What federal (or state agency if the federal law places this on the states) is responsible for enforcement? If multiple agencies are involved, indicate the roles and responsibilities of each.

What are the key areas for enforcement? How will compliance be measured, if at all? What penalties will be assessed, if any?

Impact on Health Care Organizations:

What should a Health Care Administrator know about this legislation and its related implementation? Does the implementation of this policy impact how Health Care Administrators deliver services? Include five bullets of how this federal legislation impacts health care organizations operating in your home state.  How would the Health Care Administrator ensure compliance?

Resource(s):

What internet resources are available to health organizations to find updates on programs implemented as a result of the policy you described? 

 
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Briefly Discuss How Mutations To DNA Can Occur And What The Effects Mutations May Cause.

a. Briefly discuss how mutations to DNA can occur and what the effects mutations may cause.

A permanent change in the DNA sequence occurs. While this happens the mutations alters the amino acid sequence. The process is a permanent change in the DNA sequence of a gene. Mutations in a gene’s DNA sequence will alter the amino acid sequences of the protein which is encoded by the gene.

b. Are mutations “good,” “bad,” both or “neutral,” from a biological perspective? Explain your answer. Research your answer and provide internal citations and a reference page in proper APA format.

Mutation is very tricky. On one hand, mutation is necessary to introduce variation into the gene pool of a population. Genetic variation has been shown to correlate with species fitness. On the other hand, most mutations are deleterious to the individuals in which they occur. So mutation is good for the population, but generally not so good for the individual. Some mutations arise as natural errors in DNA replication. Mutations can also be caused by agents in the environment. Mutations can affect individuals in a variety of ways. Change in a morphological trait. Nutritional, biochemical variation. Change in behavior, changes in gene regulation, even lethality.

c. Compare and contrast the processes of replication and transcription (copy/pastes the table into your document).

PROCESS WHEN does it occur? WHERE in the cell does it occur? WHAT exactly is happening during the process? What NUCLEOTIDE BASES are involved? STARTS WITH? (DNA or mRNA) ENDS WITH? (DNA or mRNA)
DNA Replication            
Transcription            

d. Complete the table below reviewing the process of translation.

PROCESS What ORGANELLE is instrumental in the process? What NUCLEOTIDE BASES are involved? STARTS WITH (DNA or mRNA)? ENDS with?
Translation        
 
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BIO 100A Unit 1 Home Lab 1″ Metric, Lab 2: Enzymes, Lab 3: Cellular Respiration, Lab 4: Genetics And DNA

BIO 100A Online Home Lab Reports

Instructions and Grading Rubric (40p)

Due by: 11:59 PM PST on the second Sunday of class

 

Directions

 

1. Before attempting to perform a lab, read the lab’s protocol in its entirety, look over the relevant supplemental materials, and gather all of the necessary materials.

2. Exercise caution and respect the safety of yourself and others at all times.

3. Keep notes as you perform experiments.

4. Use the lab reports to report your results.

5. Type your answers, observations, and results in bold.

6. Save your report often as you fill it out, so as not to lose information.

7. Use the “Save As” option to save your file as a Word file.

8. Save your lab report with this file name: Last name, underscore, First Initial, underscore H1. Thus Charles Darwin would save his Unit 1 Home Lab Report 1 as Darwin_C_H1.

9. Submit reports 1-4 as under the corresponding assignment link in week 2before 11:59 PM PST on the second Sunday of class.

10. Submit reports 5-8 as under the corresponding assignment link in week 4before 11:59 PM PST on the second Sunday of class.

11. Please note that the reports will be scanned for plagiarism, and it will be flagged for both containing web content verbatim and previously submitted papers- this includes your previous submissions if you have taken the class previously.

 

Laboratory Reports

 

Each of your lab reports MUST include the following components to receive full credit and be organized in the following way.

 

1. Purpose (4 pts): one to two sentences briefly stating the learning objective for the assigned lab.

 

2. Lab Summary (6 pts): Explain what was observed during the lab activity. This section should be approximately one paragraph in length.

 

3. Lab Answers (14 pts): Answers to the lab report questions that reflect and demonstrate your understanding on the concepts. (Should be written in complete sentences for Labs 2-6)

4. Discussion and Conclusions (16 pts):1-2 paragraph learning reflection that summarize the lab and specifically addresses the learning objectives relating them back to the data or observations collected in the lab.

 

Grading rubric

 

Unacceptable Poor Effort Good; Needs Improvement Meets all Requirements
Purpose No purpose provided (0 points) Purpose does not state the learning objective and is unclear (1 point) Purpose states learning objective but is not well thought through or written in a complete sentences. Purpose does not cover all aspects of the lab. (2 point) Purpose states the learning objective, touches all aspects of the lab, and is written in a complete, well-thought out sentences (4 points)
Lab Summary Missing (0 points) Summary is incomplete (2 point) Summary lacks complete thoughts and are not thorough (4 points) Summary explains what occurred throughout the entirety of the lab and are 1 paragraph in length (6 points)
Lab Answers No answers provided (0 points)

 

Lab answers lack detail, understanding, and/or bold print. Not all answers are provided (2-6 points) Lab answers are provided and reveal the student had a strong understanding of the lab objectives. Not all questions are answered in detail or in bold. (8-12 points) All lab answers are provided and reveal the student had a strong understanding of the lab objectives. Each question is answered in detail and in complete sentences. Also, the answers are in bold (14 points)
Discussion and Conclusions No discussion & conclusions (0 points) The discussion & conclusions does not meet length requirements and provides a weak summary of the lab activity and data (2-8 points) The discussion & conclusions is on the shorter side of the length requirements and does not contain a thorough summary of the lab objectives and/or findings (9-15 points). The discussion & conclusions is 1 -2 paragraphs long and contains references to the data found in the lab. The conclusion summarizes findings and reiterates the learning outcomes. Numerical values are mentioned. Possible issues, mistakes, and other occurrences during the lab are discussed (16 points). Please note this is not a diary!

Weak discussion & conclusions containing little in the way of quality content or revealing a lack of effort towards reflecting on the purpose of the lab activity will receive ZERO credit!

 

Unit 1 Home Lab 1: Metric system

Points: 40p

Name:

 

Purpose (4p)

 

Lab Summary (6p)

 

 

Lab Answers (14p)

1. Using a metric ruler, determine the length of the items in Table 1.1 below:

 

In the final column, you are to estimate your measurement precision. To do this, measure each item a second or even third time. How close are the measurements? If there is a range of values for the length you measure, record the average difference between measurement values as your uncertainty. If your measured value for a given object appears the same after repeated measurements, this does not necessarily mean that your uncertainty is zero. Look closely at your ruler or measurement device and estimate the smallest unit of length that you would be able to discriminate with it. Every measurement device has limits. For instance, very few people use a ruler with a precision greater than 1/3 or 1/2 of a millimeter; in many cases, even this precision is difficult or impossible to obtain. Typically +/- 1 mm is standard for measuring flat objects with a ruler, but this uncertainty can be expected to go up when the object has significant curvature or its length is not quite so well defined.

 

To measure the circumference (length around) of your head or thigh, wrap a piece of string around it and mark where the string meets itself. Then lay the string out flat and measure the length with your ruler.

 

Table 1.1. Metric measurements and uncertainties.

meters cm mm inches

 

Uncertainty

?

Your favorite shoe .254 25.4 254 10 2.54
Your index finger 0.0762 7.62 76.2 3 7.62
A pencil 0.1524 15.24 152.4 6 1.524
Fingernail of your pinky 0.003175 0.3175 3.175 1/8 .3175
Width of a credit card
The circumference of

your thigh

The circumference of

your head

2. Measure and record volume in Table 1.2.

 

Estimate the rough volume of your head by using the circumference (denoted C) and multiplying out this formula (based on the volume of a sphere =4pr3/3 = C3/(6p2)):

 

Volume ? 1/59 × C × C × C = C3/59

 

Estimate the uncertainty in your head volume (?V, called “delta V”) calculation by using the uncertainty in your measurement of the circumference of your head (denoted ?C) and multiplying through the following formula:

 

?V ? 3/59 × C × C × ?C = 3/59 × C2 × ?C

 

Table 1.2. Head volume and uncertainty estimates.

Circumference

(C)

Uncertainty in

Circumference

(?C)

Head Volume

 

? 1/59 C3

Uncertainty in

Head Volume (?V)

? 3/59 × C2 × ?C

 

 

3. Complete the conversions in Table 1.3. The first row has been done.

 

Table 1.3. Length conversions.

Length km m miles feet
2.0 km 2.0 2,000 1.24 6,562
705 m 705
3.25 miles 3.25
300 ft 300

 

 

4. Complete the conversions in Table 1.4.

 

Table 1.4. Mass conversions.

Weight kg g pounds (lbs)
5.0 kg 5.0
400 g 400
50 pounds 50

 

 

 

5. Complete the conversions in Table 1.5.

 

Table 1.5. Volume conversions.

Volume liters ml gallons
6.0 liters (l) 6.0
600 ml 600
3 gallons 3

 

 

6. Complete the conversions in Table 1.6.

 

Table 1.6. Temperature conversions.

Temperature °C °F
100 °C 100
27 °C 27
-2 °C -2
27 °F 27
95 °F 95
-40 °F -40

 

 

7. Population biologists use the term “Doubling time” to refer to how long it takes a population to double in size. This concept is particularly useful when the average time for a given individual to reproduce is fairly constant in a species. Consider a bacterial population that can reproduce by dividing into two daughter cells (binary fission) from an original single individual cell. Assume a doubling time of ten minutes and fill out the following table. At time zero there is one bacterium, ten minutes later there are two bacteria, ten minutes after that there are 4 bacteria, etc. Fill in the blanks in Table 1.7.

 

Table 1.7. Population growth.

Number of Bacteria 1 8 First exceeds

10,000

Time 0 30 min 1 hour 2 hour

 

Unit 1 Home Lab 2: Enzymes

Points: 40p

Name:

Purpose (4p)

Lab Summary (6p)

Lab Answers (14p)

1. Fill in the following table. Compare all cups. Use relative terms to describe the size and number of bubbles in each cup. For instance, describe the Number of Bubbles using the terms: No bubbling, Moderate bubbling, Good bubbling, Very good bubbling. To describe average bubble size use the terms: Very small, Small, Large, or Very large. To describe pH without access to pH detectors, simply use the pH chart earlier in this chapter to describe each as acidic, neutral,or basic. To describe the Catalase Activity, use your data on the size and number of bubbles to estimate the amount of gas produced in the Catalase mediated process. Use the following terms: Very Low, Low, Moderate, High, Very high

 

Table 2.1. Catalase reaction observations.

Cup Number of Bubbles Size of

Bubbles

pH Catalase

Activity

1
2
3
4

 

 

2. Bubbling indicates the formation of what chemical?

 

 

3. Describe the activity of Catalase as pH increases. Do you think that other enzymes are likely to behave in this way as well? Why or why not.

 

 

4. Assume that you have a pH meter which would enable you to very accurately measure the pH of a solution. Describe an experimental design that would allow you to pinpoint the exact pH at which Catalase is the most active.

 

 

5. Regarding cup #1:

a) Describe the utility of cup #1 as a control.

b) What other material did you introduce to this cup? Describe what you observed. How does Catalase activity in the material you investigated compare to potato?

Unit 1 Home Lab 3: Cellular Respiration

Points: 40p

Name:

Purpose (4p)

Lab Summary (6p)

Lab Answers (14p)

1. List the following experimental materials:

a) Kind of yeast used:

b) Kind of water used:

c) Average temperature of the water bath during the experiment:

d) Average room temperature during the experiment (estimate if necessary):

e) Duration of yeast solutions exposure to bath:

 

2. List your results in Tables 3.1 – 3.4.

 

Table 3.1. Independent variables and experimental conditions.

Bottle Sugar Yeast Water Yeast solution

height (in cm)

To be heated in warm water bath?
1 1 teasp 2 teasp ¼ cup No. Leave this bottle at room temp.
2 1 teasp 2 teasp ¼ cup Yes.
3 1 teasp 2 teasp ¼ cup Yes. Replicates bottle #2
4 1/3 teasp 2 teasp ¼ cup Yes.
5 No Sugar 2 teasp ¼ cup Yes.
6 ¼ cup

 

Table 3.2. Observations of dependent variables.

Bottle Balloon size Yeast growth Other observations
1
2
3
4
5
6

 

 

 

Table 3.3. Balloon size and solution height measurements.

Bottle Circumference,

C (cm)

Uncertainty in C,

?C

Radius

(long axis, R;

cm)

Uncertainty in R,

?R

 

New height of

yeast solution

(in cm)

1
2
3
4
5
6

 

 

3. In Table 3.4, record yeast growth and estimated volume of each balloon on Bottles 1-6.

 

a. Yeast growth = New height (in Table 3.3) – Original height (in Table 3.1)

 

b. If the balloon did not inflate, it has a volume of zero.

 

c. To estimate the volume of each balloon, use the following formula for the approximate volume of an ellipsoid with a horizontal circumference C and long axis radius R (from Table 3.3):

 

Volume ? 2/19 × (C × C × R)

 

d. To estimate the fractional uncertainty in the volume, use this formula:

 

?V ? 2 × (?C +?R) / C

 

Table 3.4. Yeast growth and balloon volume.

Bottle Independent Variable Yeast growth:

(Change in

solution height)

Balloon Volume

(cm3)

Uncertainty in

Balloon Volume

estimate (?V)

1 No heating
2 Control 1
3 Control 2
4 1/3 teaspoon sugar
5 No sugar
6

 

 

4. Outline the experimental questions in this yeast activity (in a paragraph or two).

 

5. Describe what is measured by the balloon volume. How does it correlate with yeast growth?

 

6. Compare Bottles # 2 & 3. Are they very different? Discuss the utility of having a duplicate measurement when considering the precision of your experimental technique.

 

7. Compare Bottles # 1 to 2 & 3 and discuss the effect of temperature on cellular respiration in yeast.

 

8. Compare Bottles # 2, 3, 4, 5 and discuss the effect of sugar on cellular respiration in yeast.

 

9. Discuss results obtained with your experimental Bottle #6 in comparison with the other experimental conditions.

 

10. In a paragraph or two, describe your conclusions, thoughts about what you learned about cellular respiration, and/or things that went wrong.

Unit 1 Home Lab 4: Genetics and DNA

Points: 40p

Name:

Purpose (4p)

Lab Summary (6p)

Lab Answers (14p)

 

1. Describe what you can see in the final DNA extraction solution. Is the precipitant bubbly or stringy? Does it stick together or does it form many islands?

 

2. List your phenotype for the tongue rolling, ear attachment, and hitch-hiker thumb traits in Table 4.1. Use the following notation:

a) If you can roll your tongue, then your phenotype is R. If you cannot, then your phenotype is r.

b) If your earlobes are unattached, then your phenotype is U. If your earlobes are attached, then your phenotype is u.

c) If you do not have a hitch-hiker thumb, then your phenotype is H. If you do have a hitch-hiker thumb, then your phenotype is h.

 

Use the information above to determine your possible genotypes and record them in Table 4.1. Notice that the phenotype for a given trait is recorded with a single letter, whereas the genotype requires two letters per trait.

 

Then, using what you have figured about your genotype, infer the different possible genotypes that your parents could have had. For instance, if you determine that your possible genotype for earlobe attachment is UU or Uu,then the possible parental genotypes are:

 

Possible parents of UU: UU ×UU; UU ×Uu; Uu × Uu

Possible parents of Uu: UU ×Uu; UU × uu; Uu × Uu; Uu × uu

 

For this question, do not ask your parents about their phenotypes! You will do this in question 3. Question 2 is an exercise in inference based on your understanding of genetics.

 

 

 

 

Table 4.1. Personal phenotype and genotype; inferred possible parental genotypes.

Trait

 

Your

Phenotype

Your possible

Genotypes

Inferred possible parental genotypes

 

 

Tongue rolling

(R or r)

 

Earlobe attachment

(U or u)

 

Hitch-hiker thumb

(H or h)

 

 

 

3. Complete Table 4.2 for you, any blood relatives that you can ask (i.e., parents, siblings, children, etc.), and at least five unrelated “Others” (e.g., spouse, friends, co-workers, etc.). As before, phenotypes for a given trait are recorded with a single letter. You may wish to report separately on your children and spouse in Table 4.3.

 

Table 4.2. Observed parental, sibling, and other’s phenotypes,

Trait

 

Mother’s

Phenotype

Father’s

Phenotype

Relatives’

Phenotype(s)

Others’

Phenotype(s)

 

Tongue rolling

(R or r)

 

Earlobe attachment

(U or u)

 

Hitch-hiker thumb

(H or h)

 

 

In Table 4.2, are there any traits that are particularly common or uncommon among you and your relatives, compared to the unrelated others?

 
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Bioinformatics (Biology)

Name: ___________________________

BIFS 619 Midterm Exam

Directions

· Total grade for this exam is 100%. The exam is worth 10% of the overall course grade.

· Please post your exam by the end of Week 6. Late turn-in policy will be applied!

· Write down your answers below each question. Before posting your exam, save this file as <YOUR_LAST_NAME>_Midterm_Exam.doc. It is your responsibility to make sure that the file is uploaded successfully.

· Write down your name in the header of this document.

· Please limit your response to each question to approximately ½-page, single-space and limit the total exam to approximately 2-pages.

· Make sure to check your answers to remove any grammatical errors or typos.

· Everything must be in your own words. If any answer is plagiarized from a copyrighted source, you will get zero from the exam and procedures on plagiarism will be followed.

· Good luck on the exam!

Questions

1. (25%) Briefly describe the gene translation process and the differences in translation mechanisms between the three domains of life.

2. (25%) Describe several different types of mutations, the various mechanisms of mutational repair, and the SOS response.

3. (25%) Briefly describe some current Next Generation Sequencing platforms and how they differ from more traditional Sanger sequencing and microarray platforms.

4. (25%) Give a high-level overview of the protein BLAST process. What resources are available for protein BLAST, how do you determine the statistical significance of sequence alignments, and how do you identify conserved sequences and motifs.

PAGE

2

 
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