Unit 6

ignment Details

Focus on Case Studies in Neurology

For this assignment you will respond to three case studies.

What is a Case Study?

“A case study is a narrative used to help you practice real-life analysis and communication skills. It is a learning tool that provides readers with “enough detail…to understand the nature and scope of the problem, and…serve as a springboard for discussion and learning” (O’Rourke, 2007, p. 391).

Use your textbook and academic resources from the Library to support your responses.

Access the Library directly from Course Resources for this class, or through the student portal. Be sure to cite and reference all your sources. The Library has a feature that allows you to automatically create an APA formatted reference.

Your completed case studies should be between 750–1000 words, and all sources must be properly cited using APA format.

CASE STUDY #1

  1. Amy is cooking dinner for her family. She moves to pull a pot off the stove and accidently touches the burner. She reflexively pulls her finger away from the stove and immediately feels the pain.
    1. Which receptor neuron is responsible for sending information from her finger to her peripheral nervous system?
    2. Is this receptor neuron, an afferent or efferent neuron?
    3. Explain where the information from the receptor neuron is sent and how does it result in Amy moving her finger away from the stove.
    4. Describe the three classes of neurons involved in this response.
    5. Evolutionarily, why do you think the human body has this system in place?
    6. What might happen if we did not have this response?

CASE STUDY #2

  1. Glen, who is 45 years old, begins to notice that his hands shake (tremors) when he is performing everyday tasks such as signing his signature. His family members have noticed that he also has muffled speech and tends to shuffle when he walks. He is diagnosed with Early Onset Parkinson’s disease.
    1. What is Early Onset Parkinson’s disease?
    2. What specific cell type is affected in Parkinson’s disease?
    3. What is dopamine? What effects does dopamine have on the body?
    4. Explain the structure of a synapse and why Glen’s neurologist would prescribe him a dopamine agonist?
    5. Glen has genetic testing performed and it is determined that he does carry an autosomal dominant mutation in the SNCA gene associated with Early Onset Parkinson’s disease. Glen has three children. Would you advise his children to have genetic testing performed to determine if they also carry the disease mutation? Why or why not?

CASE STUDY #3

3. Patricia, who is 37 years old, discusses with her physician recent symptoms that she has experienced including blurred vision, numbness in her fingers and face, dizziness, fatigue and weakness. The physician performs multiple neurological tests and she is diagnosed with multiple sclerosis (MS).

  1. What is MS?
  2. Is MS a disease of the central or peripheral nervous system?
  3. What is the main cell structure affected in MS?
  4. How is the action potential of a neuron affected in MS?
  5. The origins of MS are not clear. What do scientists hypothesize to be the causes of MS?

Your assignment should be written in an essay format. The assignment requires you to include details from research including the course materials and sources you locate on your own. Remember to use APA format to cite your sources of information, both within parenthetical citations and also within a reference page at the end of the project.

Basic Writing Requirements:

  • Between 750–1000 words not counting the title or reference pages.
  • Include a title page, double space, font size 10 or 12.
  • Include a well-developed introduction and conclusion
  • Provide exceptional content.
  • Demonstrate superior organization: use logic.
  • Free of grammar and spelling errors.
  • No evidence of plagiarism.
  • Use APA style for all citations and references.
 
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Assignment 2

The Multiple Loci VNTR (variable nucleotide tandem repeat) analysis (MLVA) technique is used to identify strains of organisms.

Because the database is quite large for S. aureus and publicly available, we’re going to focus this second assignment on an analysis of this method. Go to the website http://mlva.u-psud.fr/mlvav4/genotyping/index.php, which contains a link to a number of databases. On the left menu, click on the Staphylococcus_aureus database under the Collaborative databases option. First click the “View” button. You’ll then see appear a large list of different isolates of this strain.   Click on the “Panels” button on the right to reveal different MLVA data.

1. Under the MLVA section to the right, there are a series of mostly tags: “Sa0122, Sa0266”, ….   Below that are mostly integers. Explain what these tags mean and what the numbers stand for, based on your readings in other sections this week.

2. Describe the difference between MLVA and MLST.

3. Why are some of the MLVA numbers blank?

Now go back to the left menu and select “Staphyloccus_aureus” and choose the “Query” button instead.

4. There is a button that says “select a panel”, or you can select using checkboxes the ones you want to use. Describe the difference between the two.

Select the MLVA14Orsay option and click “Submit”.  (make sure it is the MLVA option on the left, not the MLSA on the right).

Now you see a MLVA box listing the different loci that you are going to query. Each site is a different MLVA marker. Below is an option where you can enter your MLVA set with a space between each number.   Notice that there are 14 numbers, matching the MLVA14Orsay option. Type in the sample sequence exactly as listed to see what the sample output would look like. “10 6 3 4 3 7 7 5 4 4 5 2 3 3”

You get a direct hit (of course), and it shows you the those fingerprints most closely related to the one you chose. To which strains was this hit most similar?

5. Does this mean the strains themselves came from these locations?

Notice how the red boxes indicate differences from the sequences that you entered.

6. Click on “Tree” using the “Tools” pullout menu, and select the Newick tree.  Download the tree as a text file.  Upload it here (http://etetoolkit.org/treeview/) and download the graph that you get from it, placing it into this assignment.

Now we’re going to switch over to doing analysis of Yersinia pestis using MLVA typing. Go back to the main page and select “Yersinia pestis2004”. Again, click “View” so you have an idea of what you are looking at.

7. The nomenclature is slightly different, as are the markers. Why?

8. Why doesn’t it make sense to use 50 markers for MLVA analysis, to increase specificity? Here’s a paper that discusses the addition of more VNTRs the current Anthrax MLVA analysis for ideas. http://www.ncbi.nlm.nih.gov/pubmed/19469279

9. Open the Y. pestis MLVA7 database and choose one of them.  (For example, I chose (10 9 9 8 7.5 9 6).)  Make a tree using the instructions on the website.  Purposely make a mismatch and see what happens when you generate a second tree.  What changes?  Describe the major difference between the two “trees”.

10. Go back to the main menu. Select “Geographic View”. Notice how it takes you to a world map that shows you where the isolates were found.

11. Access the matrix of distances. What does this do?

12. Find at least one other MLVA site that does sequence analysis and post it in the conference area. In one or more sentences, briefly say what the site is, what it focuses on, and what nation it is from.

13. Complete your assignment by summarizing what you’ve learned in one paragraph.  It should be a rather detailed paragraph that reflects on the various issues that this assignment has shown you.

Here are a few more sites that talk about some issues with this database.

http://mlva.u-psud.fr/MLVAnet/spip.php?article90

APA format, in-text citation, references include, 3 pages to answer all 13 questions.

 
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Evidence For The Theory Of Evolution

1. Evidence for the theory of evolution includes all but __________ (Points : 5)
the fossil record.
biochemical similarities among all living things.
catastrophism.
biogeography.

2. Chelonia mydas is the scientific name for the green turtle. Chelonia is the __________ (Points : 5)
genus.
species.
order.
domain.

3. Characteristics of prokaryotes include all of the following EXCEPT FOR: (Points : 5)
a single, circular chromosome
most commonly reproduce by asexual fission
having membrane enclosed organelles
small in size and can only be seen with a microscope

4. Protists ____________. (Points : 5)
are prokaryotic cells.
have a nucleus.
are most closely related to animals.
live in dry environments.

5. Viruses are __________ (Points : 5)
prokaryotic cells.
eukaryotic cells.
non-living particles.
large in size.

6. Angiosperms produce all of the following EXCEPT __________ (Points : 5)
flowers.
fruit.
pollen.
cones.

7. An organism is multicellular, has cell walls made of chitin, and absorbs its food. In which Kingdom does it belong? (Points : 5)
Animalia
Fungi
Plantae
Protista

8. Dissolved sugar is carried throughout the plant in which tissue? (Points : 5)
cortex
xylem
cambium
phloem

9. Characteristics of animals include all of the following EXCEPT FOR: (Points : 5)
multicellular
unwalled cells
capable of photosynthesis
have the ability to reproduce sexually

10. Which of the following statements is TRUE? (Points : 5)
Mammals are invertebrates.
Invertebrates have a backbone.
There are more species of invertebrates than vertebrates.
Arthropods are the least abundant species.

11. Where is bile produced? (Points : 5)
the gall bladder
the pancreas
the liver
the small intestine

12. The sites of gas exchange in the lungs are the ____. (Points : 5)
bronchioles
alveoli
bronchi
integument

13. The functional units inside of kidneys are the ____. (Points : 5)
sarcomeres
ureters
malpighian tubules
nephrons

14. ___ tissue allows a body to detect and respond to internal and external changes. (Points : 5)
Epithelial
Muscle
Connective
Nervous

15. Which blood vessels return the blood to the heart from the lungs? (Points : 5)
pulmonary arteries
pulmonary veins
systemic arteries
systemic veins

16. The relationship between a flowering plant and mycorrhizal fungi is an example of ___. (Points : 5)
commensalism
parasitism
mutualism
predator/prey interaction

17. Currently, the human population is nearing ___. (Points : 5)
275 million
3 billion
7 billion
9 billion

18. Which of the following organisms would be found at the lowest trophic level of a food chain? (Points : 5)
rabbit
hawk
mushroom
oak tree

19. Which of the following is not considered a density-dependent factor? (Points : 5)
An infestation of parasites on a deer population
Competition for nesting sites for bald eagles
Predation of cheetahs on a population of gazelles
A hard freeze on a plant population

20. A keystone species ___ (Points : 5)
nfluences the survival of several other species within a community.
never goes extinct.
has little impact on the ecosystem.
has the largest population in an ecosystem.

 
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BIOLOGY QUESTION

ASSIGNMENT 1:

Background

Biotechnology allows the use of living organisms or their processes for human needs or purposes. Currently, this topic includes such general examples as cloning, stem cells (adult, umbilical cord, and embryonic), DNA fingerprinting, biological warfare, bioremediation, genetically modified organisms, vaccines, and transgenic plants and animals to name a few. In this assignment, you will explore specific examples of biotechnology applications.

Assignment Details

Part 1

Biotechnology is the use of a living thing or any part of a living thing to make a product or process that improves human life. For this part of the assignment, discuss the following:

· What are some of the examples of biotechnology that have made improvements to your life?

· Describe how one of these has made your life better.

· Do you have any concerns with biotechnology? Explain.

Part 2

In 2008, the Food and Drug Administration (FDA) approved food derived from cloned animals. In addition, these products will not need to be labeled as “cloned” or “from clones” (Black, 2008). The FDA explains that you will not be eating the clone itself. It takes thousands of dollars to clone a food animal such as a cow or pig. Animals that are cloned for improved food production will be used for a breeding program to produce many offspring with the desirable traits for increased meat or milk yield. These offspring of the clones will be fair game for food. Discuss the following:

· Do you think there are differences between a clone and a “normal” animal?

· How do you feel about eating a cloned animal?

· Is your opinion of eating a cloned plant different?

Reference

Black, R. (2008). U.S. approves animal clones as food. Retrieved from the BBC News Web site: http://news.bbc.co.uk/2/hi/7190305.stm

Provide references in APA format. This includes a reference list and in-text citations for references used throughout the assignment.

 

ASSIGNMENT 2:

 

Using the Laws of Inheritance

Gregor Mendel’s studies laid the foundation for modern genetics. In a series of elegant experiments, Mendel was able to deduce the most fundamental laws of single-gene and multiple-gene inheritance without having the scientific data on chromosomes, their structure, or meiotic segregation. In this lab, you will learn about and apply examples for 3 different patterns of human inheritance of traits.

In this lab, you will view information and complete activities to answer the following questions about genes and inheritance:

· What is a Punnett Square? How can it be used to analyze possible genetic outcomes for offspring?

· What is dominant/recessive inheritance?

· What is X-linked inheritance?

· What is codominant inheritance of genes?

Using the M.U.S.E. link, review the background information and animation to complete your report. Use the lab 3 worksheet for assignment instructions and data collection.

LAB 3 worksheet: (Please put in separate word document)

 

Student Sheet

Name:

 

Date:

 

Instructor’s Name:

 

Assignment: SCIE207 Phase 3 Lab Report

 

Title: Lab to Determine the Outcome of Heredity

 

Instructions: You will fill out the Punnett squares and answer a set of questions for each exercise.

 

When your lab report is complete, submit this document to your instructor in your assignment box.

 

Using what you learned on the lab animation (and the images below), you will fill in the following Punnett squares and answer the questions that follow:

 

Exercise 1: Color Blindness

 

A. Choose the parental gametes, and align these in the correct positions around the Punnett square. (Type in the correct gametes. Pink are the female gametes, and blue are the male gametes. XC is the gene for normal vision, and Xc is the gene for color blindness.)

 

 

Xc

X

B

XcB

Y

 

C

 

B. Choose the correct genotype of the progeny to fill in the Punnett square.

(Type the correct genotypes in the boxes.)

 

 

 

XCY

 

XcXC

 

XcY

 

XcXc

 

 

 

 

 

 

______ ______

 

 

 

 

 

______

 

 

 

 

 

 

______

 

 

 

 

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are the possible phenotypes of their children?  
What is the probability of the color blind trait in female children and the probability of the color blind trait in male children?  
X and Y genes code for male and female gender. XX is female and XY is male. Why is XcY color blind, but XcXC not color blind? Can an XcXC female pass the color blind trait to her children?  

 

 

Exercise 2: Freckles

 

C. Choose the parental gametes and align these in the correct positions around the Punnett square. (Type in the correct gametes. The pink are female gametes, and the blue are male gametes.)

 

 

f

F

f

F

f

 

 

 

 

A. Choose the correct genotype of the progeny to fill in the Punnett square.

(Type in the genotypes.)

 

 

FF

 

FF

 

ff

 

Ff

 

 

 

 

 

 

 

______ ______

 

 

 

 

 

 

ff

 

Ff

 

______

 

 

 

 

 

 

 

ff

 

Ff

 

 

______

 

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are the possible phenotypes of the children?  
What is the probability of freckles in their children?  
Freckles in humans are inherited by which pattern: dominant/recessive, incomplete dominance, or codominance? Why does the mother have freckles, even though she has a gene for no freckles? Why does the father have no freckles?  

 

 

 

Exercise 3: Blood Type

 

A male has Type A blood, and a female has Type B blood. Could they have a child with Type O blood? Demonstrate how this is genetically possible by filling out the Punnett square.

 

Choose the correct parental gametes from all of the potential blood type gametes below, and align these in the correct positions around the Punnett square. (Type in the correct gametes. The pink are female gametes, and the blue are male gametes.)

 

IA

IB

IA

IB

IB

IA

i

i

 

 

 

 

A. Choose the correct genotypes of the progeny, and fill in the Punnett square.

(Type the correct genotypes into the boxes from the possible genotypes shown below).

 

 

IAIA

 

IAIA

 

IBIB

 

IBIB

 

IAIB

 

IAi

 

 

 

IBi

 

ii

 

 

 

 

 

 

______ ______

 

 

 

 

IAi

 

IAIB

 

 

______

 

 

 

 

 

 

ii

 

IBi

 

 

______

 

 

 

Question Answer
What is the genotype of the mother?  
What is the genotype of the father?  
What are possible phenotypes of their children?  
What is the probability of Type AB blood in their children?  
Ms. Johnson is suing her former husband for potential child support payments for her 2-year-old child. Mr. Johnson’s attorney forcefully denies the fatherhood of his client, stating that the child of Ms. Johnson has blood type O, while the blood type of Mr. Johnson has Type A blood. The lawyer claims that Mr. Johnson cannot be the father of a child with Type O blood. Is the attorney right? Why or why not? Explain your answer.
 
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Human Genetics

Name:____________________

MMG 404 F2015 Homework # 7

12 points

due Oct. 20, 2016

1.. A certain large population is found to exhibit a frequency of 3% for an autosomal recessive trait, i.e. 3 people out of 100, on average, have the trait (assume 100% penetrance). Assuming the alleles are in Hardy-Weinberg equilibrium, calculate the expected carrier frequency. When actually tested, it was found that the carrier frequency was 15%. Suggest one possible explanation for this non-equilibrium value.

2. a. A biallelic locus, Aa, has allele frequencies of A = 80% and a=20% in a certain population. Another biallelic locus, Bb, has allele frequencies of B = 90% and b = 10% in the same population. Both loci are found to be in Hardy-Weinberg equilibrium. Calculate the expected percentages of each of the AA, Aa, aa, BB, Bb, and bb genotypes in the population.

AA= Aa= aa=

BB= Bb= bb=

b. A recessive digenic disorder (100% penetrant) occurs ONLY when one has the aabb genotype. It’s found that 15 people out of 10,000 in this population have the disorder. What would be the expected frequency of the disorder if the Aa locus and the Bb locus were segregating independently? Is the actual frequency significantly different from this?

3. A very rare disorder is shown to depend on the genotype at three unlinked autosomal loci, A/a, B/b and C/c and that to be affected one must be homozygous for the rare allele at all three loci, that is, aabbcc. The MZ twin disorder concordance is 100%, implying that the penetrance is 100%. Calculate the expected dizygotic twin concordance for presence of the affected trait, that is, if one DZ twin shows the trait, what is the chance that the 2nd twin will be affected? (Hint: because the trait is rare, assume that both parents are heterozygous for all three loci. This is NOT the probability that both twins are affected among all DZ twin pairs.)

 
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Biological Anthropology Zoo Project

Zoo project

INTRODUCTION: This assignment is designed to help you learn more about and

observe in real time some of the primates we have studied in our course, in this

case the chimpanzee. Besides your zoo visit, your final written report should

reflect thoughtful consideration of the assigned readings. The report will be based

on a description of the events in the chimp enclosure over period of 45 minutes

(minimum). Judge your time wisely and make sure to follow all the directions

presented below here. A total of 15 points may be earned IF you follow all

directions and present a well-prepared report (with ticket attached) by the

A. GRADING: Points will be awarded according to how your report covers the

following issues:

1. Describe enclosure and compare it to chimp natural habitat 3 points

 

2. Identify individual chimps as Adult Male-1; Adult Female-1; Juvenile Male-

1; Juvenile Female-1, etc. [If this is difficult, try another way to identify the

subject of your comments.] Describe at least one interaction/behavior, anything

from fast moving to just “lounging together” while grooming, etc. 5 points

3. Integrate key ideas from assigned readings* and clearly relate them to these

L.A. Zoo chimps. 5 points

4. Organize, proof read, and include a “mug shot” with admission ticket

2 points

TOTAL POINTS…15

* Required readings:

a. Review Ch. 7 (pp.167-68) and Ch. 8 (pp.180-89) for info on the primates,

in this case the chimpanzee

b. Read “The 2% Difference,” in ANNUAL EDITIONS: Physical

Anthropology 08/09 edition. See also in Discover Magazine, April 2006;

available on-line at http://discovermagazine.com/2006/apr/chimp-

genome.

ANNUAL EDITIONS (08/09)reference to the attendant. Make sure to read these selections before you go to the

Zoo.

B. KEEP IN MIND: When you walk up to any animal enclosure, the behavior

may appear to be erratic or random; maybe “nothing” is happening. However,

much of the behavior is patterned in response to a stimulus not necessarily evident

to us. Be patient. The best you can do is to carefully & accurately describe their

physical activity & note its context at the time. There is no magic bullet! Do your

best.

The Enclosure. If you include photos, do provide SHORT CAPTIONS. If you are

artistic, make a sketch of the enclosure and include it with your report. While there

is no ironclad page count for this project, please do not use pictures & drawings as

fillers! Your thoughts are paramount.

C. DRAFTING YOUR REPORT: After you have completed your observations,

go aside and carefully read over your notes. Are there any notable behavior

patterns, anything that indicates relationships, friendships, or pecking order? You

should draw on the physical characteristics of the chimpanzee provided in Ch. 8.

Integrate key information from the other required readings. Omit it and you will

lose points. Don’t fret; a good faith effort is what counts here.

D. ORGANIZING YOUR REPORT: A good report will be well organized

around the “Grading” topics. About four to five pages (double spaced) is

acceptable. This does NOT include your cover page, any photos, charts or maps.

Use one-inch margins and avoid “padding” with empty spaces between sections or

paragraphs. Most of all, sincere work and a true learning experience is what we

are after here. Your instructor’s “eagle eye” can spot the proverbial fluff and “b.s.”

Do a good job and shine!

 
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Four Short Essay Question.

Homework Directions:

 

· You will answer 4 short answer/essay questions, each worth 5 points.

· The questions will draw primarily from your textbook.

· Each answer should be approximately 200 words, its not an exact science, but if you’re only writing a sentence or two you are not going into enough detail, or answering the entire question.

· When answering questions that ask for a definition, do not use a quote from the book to give that definition! Put the answer in your own words to show you understand what is being asked.

· Use quotations sparingly. Answers that are quote after quote do not show understanding or analysis and will be marked down.

· Do not use bullet points, graphs, charts or other methods to answer.  You need to write out your analysis/answer to show me you understand the material.

· Any quotes or outside sources need to be appropriately cited.

· All answers need to be written at a college level with appropriate spelling, punctuation and grammar.

· You will be turning all of your homework in through the TurnItIn. So remember, if you cheat, it will catch you!

 

Questions:

 

1. Define the term biocultural evolution.

2. Explain what is meant by differential net reproductive success. Give an example of how this mechanism works.

3. Compare and contrast the processes and end products of mitosis and meiosis.

4. Using the HbS allele to illustrate, describe why fitness levels are a function of the environment.

 
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“Keystone Species, Shrinking Red Knots, And Biomes”

“Keystone Species, Shrinking Red Knots, and Biomes”

For your primary post, please respond to one of the following three topics with a post of at least 125 words that addresses each point given in the instructions. Also, please reply to at least one fellow student on any topic.

Topic 1

:  Keystone Species. Watch the video entitled “Some animals are more equal than others…” (1)* Then completely describe the concept of a keystone species, giving specific examples from the video.

Topic 2 [articles]: Shrinking Red Knots. Read two of the following three articles about shrinking Red Knots (2)*, (3)*, (4)*, or research additional information on your own. Then, address the following issues:

  • (a) Explain how the lifecycle of the Red Knot depends on hatchlings emerging at the same time as the insects hatch.
  • (b) What are the long-term ramifications of having a mismatch between the bird hatch and the insect hatch?
  • (c) Of the two articles you read, which of them do you feel was most informative?  Why?

Topic 3 [research]: Biomes. The term “biome” is described in the textbook. For this topic, describe the biome where you grew up (or where you currently live). Identify your location, the biome of the region, and describe the major characteristics of that biome. Add enough detail and commentary from your own experience, so that your answer is 125 words or more. If you’re really ambitious, you could consider looking up the EPA “ecoregion,” which will give additional details about your region.

*References (in Strayer Writing Standards format).

  1. HHMI Biointeractive, May 3, 2016, Some animals are more equal than others: keystone species and trophic cascades., https://www.youtube.com/watch?time_continue=1142&v=hRGg5it5FMI
  2. Helen Briggs, May 13, 2016, Shrinking bird pays the bill for Arctic warming, http://www.bbc.com/news/science-environment-36266692
  3. Joseph Dussault, May 12, 2016, Climate change chould be shrinking these arctic birds, http://www.csmonitor.com/Science/2016/0512/Climate-change-could-be-shrinking-these-Arctic-birds
  4. Carl Zimmer, May 12, 2016, Climate change and the case of the shrinking red knots,  http://www.nytimes.com/2016/05/17/science/climate-change-bird-red-knots.html?_r=0
 
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Microbiology Introduction Course With Lab Work

Microbiology for the Health Professions

Credits – 3 (Lecture) 1 (Lab)

Description

Overview

This course is designed to meet the microbiology prerequisite for students who are applying for admission to health profession programs. Most students taking this course will have an undergraduate degree and will be in the process of a career change. Online Microbiology is a one-semester course.  It will emphasize the concepts that are a necessary groundwork for courses the student will take in his/her professional program.

Topics covered in this course include: the history of microbiology, microbial morphology and physiology, bacterial metabolism, genetics, ecology, and the classification of microorganisms, particularly bacteria, fungi, and viruses. Therapeutic agents used to disrupt and control microbial growth are considered and a body systems approach is utilized in the coverage of diseases.

Materials

Textbook

· Microbiology: A Human Perspective Eugene W. Nester et.al., 7th edition

Note: The e-book version of Nester may not be used on any proctored course exam. Textbooks need to be purchased separately and are not part of your registration fee. All course materials are available through our bookstore at  http://www.newengland.bkstr.com

Laboratory Components

It is mandatory for students enrolled in the laboratory component of the course to order a lab kit. The kit must be purchased directly through Hands on Labs and cannot be purchased second hand or from another vendor. Students enrolled in lab must complete both parts of every lab – the assigned experiment and the corresponding assignment online – to earn a grade for the lab. The kits must be ordered immediately upon enrollment in order to ensure materials are on hand for the start of the course. Note: Kits can take 5 – 7 business days to arrive. Go to this link:  https://www.holscience.com/mm5/merchant.mvc?Screen=LOGN

1. ENTER Login: C000384

2. ENTER Password: labpaq

3. Choose LP-2231-MB-02: LabPaq, Microbiology, 11 Labs

4. Review the  HOL Return and Refund Policy

Learning Objectives and Outcomes

Course Objectives

Upon successful completion of the course students will be able to:

1. Define basic structure/function of microorganisms including prokaryotes, eukaryotes and viruses, with emphasis on their relationships to human disease and treatment modalities

2. Describe the kinetics and patterns of microbial growth, and environmental factors that alter growth

3. Describe key features of microbial genetics, including DNA structure and function, as well as mechanisms of DNA replication, transcription and translation

4. Explain how and why microbial gene expression is regulated, as well as how genetic mutation and DNA transfer mechanisms affect microbial evolution, fitness and pathogenesis

5. Define and compare beneficial versus pathogenic host-microbial interactions

6. Explain fundamental stains, basic staining techniques, and corresponding bacterial and fungal morphology

7. Describe the clinical manifestations associated with common bacterial, viral, fungal, and parasitic diseases

8. Describe the uses of the various media and metabolic/enzymatic testing protocols

9. Identify bacterial/fungal toxic and invasive factors and their relationship to the pathogenesis of disease

10. Classify the mechanisms of antibiotic (antibacterial/antifungal), antiparasitic, and antiviral activity, as well as resistance strategies employed by target microorganisms

11. Identify the pathogens commonly associated with infections of the skin, eyes, nervous system, respiratory tract, gastrointestinal tract and genitourinary tract in humans, as well as their modes of pathogenesis and risk factors associated with each type of disease

12. Identify common healthcare-associated (nosocomial) pathogens

13. Identify disease and likely etiology on the basis of patient signs and symptoms, pertinent history, and lab findings

14. Create a case study outline.

Assignments

Lectures and Laboratories

Our textbook allows students to utilize CONNECT from McGraw-Hill to go through the lecture course material with Learnsmart. This is a good self-assessment tool. The access code for CONNECT may be purchased using a link located within the course homepage in Blackboard.

 

Laboratory Information:

For the laboratory portion of this course, you will be be purchasing a LabPaq lab kit from the Hands On Labs (HOL). Your instructor will provide you with a link that is unique to your class. You will use this link to create an account and set up your profile and submit your work. Additional directions for Getting Started with HOL can be found in the COURSE INFORMATION section of the course.

 

Laboratory Assignments

For students enrolled in the laboratory component, most weeks have an associated laboratory assignment. Complete each assignment online using the HOL Online link provided by your instructor.

Using the HOL resource material, your notes, and in some cases outside research, answer all of the questions in each lab exercise. Your answers must be in the form of complete and grammatically correct sentences with proper spelling, grammar, and capitalization. Be mindful of the spelling for bacterial genus and species names (capitalize genus names, lower case for species names, eg., Streptococcus pyogenes). If a question is asking for terms you are not familiar with, be sure to define and understand those before you answer the question. Reference your facts using in-text citations and AMA format for your outside references.

Once you complete the lab, use the text submission field for this assignment in Blackboard to write a message to your instructor to say that you have completed the assignment. This will serve as an alert to your instructor that your assignment is ready to be reviewed and graded.

Chapter Tests, Vocabulary Quizzes, and Unit Exams

Chapter Tests

The chapter tests are multiple-choice and matching. The tests can be accessed by clicking on the link in Blackboard. The chapter tests are open book and are intended to help you review for the unit exams. They are timed and you have three attempts at each test; the questions for each attempt cover the same material, although they may be different. The highest of the three attempt grades will be recorded in the grade book. If you take the test only once, that grade will be recorded in the grade book. To prepare for the chapter tests, complete the readings, view the lecture material, and review using the CONNECT and other study helps posted in the chapter module. Also, review the end-of-chapter questions and other study aides in your textbook. When you are ready, take the test. If you wish, you may review the material and take the test a second or third time.

Module Vocabulary Quizzes

Each module has a 20-term vocabulary quiz. The terms are selected from the chapter vocabulary lists. The quizzes are taken online through the Blackboard site. Each quiz is accessed by clicking on the link in Blackboard. The quizzes are open book and are intended to help you review for the unit exams. To prepare for the vocabulary quizzes read through the lists of terms for each chapter within the module. Fit the terms into the context of the learning objectives for each chapter. The vocabulary quizzes are timed and you have three attempts at each quiz. When you are ready, take the quiz. If you wish, you may review the material and take the quiz a second or third time.

Unit exams

The five unit exams are timed exams (120 minutes) consisting of multiple choice and matching; with all questions graded automatically upon the completion of the unit exam. These unit exams are single-attempt (with no pauses allowed during the 2-hour time frame) and may be taken only once. The unit exams will be available only after all the quizzes, tests and other assessments in the unit are completed. The exams will include topics covered in the textbook, learning objectives, and lectures for each unit. These exams are open notes and open book; however, you should review the material as though you will not have the notes or book available. There will not be time during the exam to look up every answer. Of the 5 unit exams, your 4 highest exams will count toward your final grade (the lowest score will be dropped). NOTE: Do not schedule your unit exams with ProctorU. Only the HOL Laboratory Final Exam (if you are taking the lab) and the lecture Final Exam need to be proctored.

 

The Microbiology Case Study

You will create a case study for a microbial infection selected from the current pathogen list which your instructor will provide to you. Your case study will be assembled using a detailed rubric. Upon completion, and by a specified due date (within Unit 5), your case study will be submitted using the Blackboard website.

 

Final Exam

The cumulative BIOL 1020 lecture final is a proctored test so plan for at least a three-hour exam period consisting of multiple choice, matching, and short answer questions. It is open book and open notes; however, no electronic memory devices may be used, including but not limited to the internet, other files on a computer, cell phones, tablet devices, smartphones, e-books, etc.

If you have information you wish to use on the Final Exam, it will have to be printed out or hand-written and there are no exceptions to this policy.

HOL Laboratory Final Exam – For Students Enrolled in the Laboratory 

The cumulative BIOL 1020 laboratory final is a proctored test. Plan for at least a three-hour exam period consisting of multiple choice, matching, and short answer questions. It is open book and open notes; however, no electronic memory devices may be used, including but not limited to the internet, other files on a computer, cell phones, tablet devices, smartphones, e-books, etc.

If you have information you wish to use on the HOL Laboratory Final Exam, it will have to be printed out or hand-writtenand there are no exceptions to this policy.

 

Discussion Board Posts

Discussion questions cover interesting current events or materials that contribute to a deeper understanding of key concepts and allow you to interact with your classmates and the instructor. Most of the discussion questions are designed to accompany particular chapters (see specific discussion questions for more information). Each question will require you to conduct internet research, read additional materials (a short journal or magazine article), visit a specific webpage, or view a short video. Then you will write a response following the guidelines in the assignment.

To earn full credit: you will need to post a response, respond to the original posts of at least two other students, and then contribute to an ongoing discussion. For special cases where one or two students are accelerating faster through the course, the instructor will participate in the discussion so that everyone has the opportunity to interact.

Discussion Question Guidelines

1. Read the assignment carefully so that you are familiar with the materials that you need to cover and how to craft your post.

2. Respect each other’s ideas, feelings, and experience. Some of the questions involve areas of disagreement. Expect your classmates to have different opinions.

3. Use proper writing style. Correct spelling and sentence structure are expected just as if you were writing a regular paper. Use spell check and grammar check before you submit.

4. Write your posting in a word document! That way you can save a copy and use spell check and grammar check.

5. Cite the sources that you use to write your response. Follow the AMA guidelines.

6. Avoid posting large blocks of text. Break your writing into paragraphs and use a space between paragraphs to make your posting easier to read online.

7. Subscribe to the discussion so that you get email updates when there is activity.

8. Use the “reply” button rather than the “compose” button when responding to someone else’s post.

9. When responding to a classmate, address them by name.

10. Do not use postings such as “I agree,” “I don’t know either,” or “ditto.” They do not add to the discussion, take up space on the Discussions, and will not be counted.

11. Everyone benefits from an active discussion. Check back in frequently to see what others are saying.

12. Plan your time carefully. You will need to give your classmates time to respond to your postings. This is an asynchronous class where students will be in different points of the class.

13. Contact your instructor if there are schedule problems or other issues that need to be resolved.

Examinations and Grading Information

For students taking the lecture course only, the final course grade will be determined as follows:

Chapter Tests and Module Vocabulary Quizzes 20% of the final grade
5 Unit Exams (drop lowest score; 4 in total) 20% of the final grade
Final Exam 20% of the final grade
Case Study 20% of the final grade
Discussion Boards 20% of the final grade
Total Course Grade 100%

 

For students taking the lecture course with the laboratory, your final grade will be determined as follows:

Chapter Tests and Module Vocabulary Quizzes 20% of the lecture grade
5 Unit Exams (lowest score is dropped, 4 total) 20% of the lecture grade
Final Exam 20% of the lecture grade
Case Study 20% of the lecture grade
Discussion Boards 20% of the lecture grade
Total 100% of the lecture grade
12 Laboratory Exercise Assessments

HOL Laboratory Final Exam

60% of the laboratory grade

40% of the laboratory grade

 

Final Grade  
Lecture Grade 75% of Final Grade
Laboratory Grade 25% of Final Grade
Total Course Grade 100%

A letter grade is assigned according to the scheme below. The final course grade will not be posted until all the quizzes, tests, exams, and case study, are completed. For those students taking the laboratory, all lab exercise assessments and the laboratory Final Exam must be also be submitted.

Grade Scale

Grade Points Grade Point Average (GPA)
A 94 – 100% 4.00
A- 90 – 93% 3.75
B+ 87 – 89% 3.50
B 84 – 86% 3.00
B- 80 – 83% 2.75
C+ 77 – 79% 2.50
C 74 – 76% 2.00
C- 70 – 73% 1.75
D 64 – 69% 1.00
F 00 – 63% 0.00

Schedule

Course Outline

Microbiology BIOL 1020

Lecture and Lab Schedule

Unit Module Lecture topic Textbook chapter HOL Laboratory Exercise
1. Life and Death of

Microbes

1 Humans and the Microbial World 1 #1: Microbiology Laboratory Preparation
    The Molecules of Life

(Note: There is no lecture or quiz for Chapter 2. You need to be familiar with the topics, but will not be asked specific questions from this chapter on the exam.)

2  
    Microscopy and Prokaryotic Cell Structure 3  
  2 Dynamics of Prokaryotic Growth 4 #2: Microscopy for Microbiology
    Control of Prokaryotic Growth 5  
  3 Metabolism: Fueling Cell Growth 6 #3: Aseptic Technique and Culturing Microbes
    Review for and take the Unit I Exam  
2. Microbial

Genetics and

Diversity

4 DNA to Proteins 7 #4: Bacterial Enumeration – Dilutions and Plate Counts
    Bacterial Genetics 8  
    Biotechnology and Recombinant DNA 9  
  5 Identification and Classification of Prokaryotic Organisms 10 #5: Bacterial Morphology and Staining Techniques
    The Diversity of Prokaryotic Organisms 11  
    The Eukaryotic Members of the Microbial

World

12  
  6 Viruses, Prions, and Viroids: Infectious Agents of Plants and Animals 13 #6: Antibiotic Sensitivity – Kirby Bauer Diffusion Test
    Review for and take the Unit II Exam  
Unit Module Lecture topic Textbook reading HOL Laboratory Exercise
3. Microorganisms

and Humans

7 The Innate Immune Response 14 #7: Biochemical Testing For Microbial Identification – Methyl Red, Voges-Proskauer, and Catalase
    The Adaptive Immune Response 15  
  8 Immunological Disorders 17 #8: Biochemical Testing For Microbial Identification – Carbohydrate Fermentation Testing
    Applications of the Immune response 18  
  9 Host-Microbe Interactions 16 #9: Bacterial Identification Through Functional Media – Motility Testing
    Epidemiology 19  
  10 Antimicrobial Medications 20 #10:Environmental Influences on Microbial Growth – Salt Tolerance and pH Testing
    Review for and take the Unit III Exam  
4. Infectious

Diseases

11 Respiratory Infections 21 #11: Fomite Transmission
    Skin Infections 22  
  12 Wound Infections 23 #12: Food Safety
    Digestive System Infections 24  
  13 Genitourinary Infections 25  
    Nervous System Infections 26  
  14 Blood and Lymphatic System Infections 27 HOL Laboratory Final Exam: Prepare for the Laboratory Final Exam
    HIV Disease and Complications of Immunodeficiency 28  
    Schedule your HOL Laboratory Final Exam with ProctorU (at least one week prior to taking the exam)

Review for and take the HOL Laboratory Final Exam

Review for and take the Unit IV Exam

Request the current pathogen list from your instructor for your Case Study!

5. Applied

Microbiology

15 Microbial Ecology 29  
    Environmental Microbiology 30  
    Food Microbiology 31  
  16 Review for and take the Unit V Exam

Submit your Case Study!

Schedule your Final Exam with ProctorU (at least one week prior to taking the exam)

Review for and take the Final Exam

 

Student Resources

Course Length

A schedule of lectures and assignments is included in this syllabus. This is, however a self-paced course and you can complete the course in less time.

1. Courses in SPHP program are equivalent to one-semester courses designed to be completed in 16 weeks

2. Enrollment in the course begins the day your section opens which is listed in the Academic Calendar found on the Student Success Portal.

3. Course start and end dates are in respect to Eastern Standard Time.

Incomplete Grade Policy

Students are expected to complete all course work by the end date of the course. To view the incomplete grade policy, please  click here .

 
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He Baby’s Brain: Wider Than The Sky Full

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PBS

At age 95, the poet Stanley Kunitz was named U.S. poet laureate and was still writing new poems and reading to live audiences-an inspiring example of the brain’s vitality in the final years of life. This program presents recent discoveries in neuroscience that tell us how the brain ages, and how that aging process and intact mental functions aren’t mutually exclusive. The film demonstrates that older brains continue producing new neurons and possess unique characteristics that form the basis for wisdom. Alzheimer’s disease is also an important topic. Distributed by PBS Distribution. Part of the series The Secret Life of the Brain. (56 minutes)

The Aging Brain: Through Many Lives

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The Baby’s Brain: Wider Than the Sky, Full Video (54:21)

Segments Transcript

FULL PROGRAM

The Baby’s Brain: Wider Than the Sky

SEGMENTS

  1. Human Brain: Ultimate Machine03:05
  2. Premature Infant Brain02:02
  3. Genetic Code Script01:27
  4. The Primitive Beginning of Thoughts and Feelings01:56
  5. Neuron Pathways02:20
  6. Neuron Migration01:50
  7. Genetic Blueprint03:25
  8. Coping Before the Brain is Ready01:52
  9. Learning Disabilities in Preemies01:33
  10. Shaping the Brain in Unintended Ways02:05
  11. Emulating the Womb03:21
  12. Nature vs. Nurture04:11
  13. Preemie Brain Development02:51
  14. Physical Change in Development of Brain Parameters02:59
  15. Negotiating a Complicated World01:57
  16. Critical Stimulation01:16
  17. Critical Images02:20
  18. Fighting for Cortical Connections03:12
  19. Maturing Without Visual Experience01:45
  20. Removing Cataracts in Time01:43
  21. Plastic Human Brain02:17

Hide Segments/Transcripts 

DESCRIPTION 

Only four weeks into human gestation, the brain’s first cells, the neurons, are already forming at an astonishing rate—250,000 every minute. This program illustrates that process and the more complex brain development that occurs during an infant’s life, both before and following birth. Viewers learn how vision and the visual cortex come into play; what happens when a baby is born with visual impairment, such as infant cataracts; and many more facts and insights regarding the early brain’s ability to shape itself in response to the demands of the world. Distributed by PBS Distribution. Part of the series The Secret Life of the Brain. (56 minutes)

Distributed by PBS Distribution.DETAILS Producer: PBSSeries: The Secret Life of the BrainDate Added: 12/12/2009Copyright Date: © 2001Item #: 41054Type: Documentary FilmRun Time: 54:21TAGSAnatomy Biological neural network Biology Brain Human brain Mind NeuropsychologyNeuroscience Neuroscience and intelligence

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